HL_4V7K_219

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGAAAUC

Length

8 nucleotides

Bulged bases

4V7K|1|AA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_219 not in the Motif Atlas

Geometric match to HL_9H3G_038

Geometric discrepancy: 0.3136

The information below is about HL_9H3G_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

4V7K|1|AA|G|224
4V7K|1|AA|A|225
4V7K|1|AA|G|226
4V7K|1|AA|A|227
4V7K|1|AA|A|228
4V7K|1|AA|A|229
4V7K|1|AA|U|230
4V7K|1|AA|C|231

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AP

50S ribosomal protein L15