HL_4V7K_227

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V7K|1|Aa|U|839, 4V7K|1|Aa|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_227 not in the Motif Atlas

Geometric match to HL_4V9F_019

Geometric discrepancy: 0.3654

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V7K|1|Aa|G|837
4V7K|1|Aa|G|838
4V7K|1|Aa|U|839
4V7K|1|Aa|C|840
4V7K|1|Aa|U|841
4V7K|1|Aa|C|848
4V7K|1|Aa|C|849

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ar

30S ribosomal protein S18