HL_4V7K_239

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGCAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_239 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2577

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7K|1|Ba|C|1264
4V7K|1|Ba|G|1265
4V7K|1|Ba|G|1266
4V7K|1|Ba|C|1267
4V7K|1|Ba|A|1268
4V7K|1|Ba|A|1269
4V7K|1|Ba|C|1270
4V7K|1|Ba|G|1271

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bm

30S ribosomal protein S13

Chain Bs

30S ribosomal protein S19

Chain Bu

30S ribosomal protein Thx