HL_4V7L_066

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

4V7L|1|BA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_066 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3916

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V7L|1|BA|C|884
4V7L|1|BA|C|885
4V7L|1|BA|C|886
4V7L|1|BA|A|887
4V7L|1|BA|C|888
4V7L|1|BA|C|889
4V7L|1|BA|A|890
4V7L|1|BA|G|892

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AS

30S ribosomal protein S19