HL_4V7L_178

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGAACAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_178 not in the Motif Atlas

Geometric match to HL_6D12_001

Geometric discrepancy: 0.2393

The information below is about HL_6D12_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4V7L|1|DA|G|977
4V7L|1|DA|G|978
4V7L|1|DA|G|979
4V7L|1|DA|A|980
4V7L|1|DA|A|981
4V7L|1|DA|C|982
4V7L|1|DA|A|983
4V7L|1|DA|A|984
4V7L|1|DA|C|985
4V7L|1|DA|C|986

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L30

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DU

50S ribosomal protein L20