HL_4V7L_183

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGUCGUCA

Length

9 nucleotides

Bulged bases

4V7L|1|DA|G|1325, 4V7L|1|DA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_183 not in the Motif Atlas

Geometric match to HL_7A0S_041

Geometric discrepancy: 0.328

The information below is about HL_7A0S_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07145.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V7L|1|DA|U|1323
4V7L|1|DA|G|1324
4V7L|1|DA|G|1325
4V7L|1|DA|U|1326
4V7L|1|DA|C|1327
4V7L|1|DA|G|1328
4V7L|1|DA|U|1329
4V7L|1|DA|C|1330
4V7L|1|DA|A|1331

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DR

50S ribosomal protein L17

Chain DW

50S ribosomal protein L22