Motif HL_07145.2 Version HL_07145.2 of this group appears in releases 3.84 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6
1	HL_5TBW_027	5TBW	0.6518	4		1	LSU rRNA	C	1239	A	1240	G	1242	G	1243	A	1244	C	1248	G	1249	cWW
2	HL_3AKZ_011	3AKZ	0.0000	2		E	tRNAGln	A	31	C	32	C	34	U	35	G	36	A	38	U	39	cWW	ncSW
3	HL_3AL0_002	3AL0	0.3391	2		E	tRNA	A	31	C	32	C	34	U	35	G	36	A	38	U	39	cWW	cWW
4	HL_7A0S_041	7A0S	0.3661	1		X	LSU rRNA	G	1646	U	1647	C	1648	A	1649	A	1650	G	1652	C	1653	cWW	ncWW
5	HL_8C3A_027	8C3A	0.5588	4		1	LSU rRNA	C	1235	A	1236	G	1238	G	1239	A	1240	C	1244	G	1245	cWW	cWWa
6	HL_5J7L_161	5J7L	0.7405	4		DA	LSU rRNA	C	1064	U	1065	A	1067	G	1068	A	1069	A	1073	G	1074	cWW
7	HL_5D8H_001	5D8H	0.8004	4		A	LSU rRNA	C	1174	U	1175	A	1177	G	1178	A	1179	A	1183	G	1184	cWW
8	HL_1MMS_001	1MMS	0.7952	4		C	23S RIBOSOMAL RNA	C	1064	U	1065	A	1067	G	1068	A	1069	A	1073	G	1074	cWW
9	HL_6PRV_001	6PRV	0.8185	4		A	LSU rRNA	C	1064	U	1065	A	1067	G	1068	A	1069	A	1073	G	1074	cWW
10	HL_3CUL_003	3CUL	0.8153	2	T-loop related	C	RNA (92-MER)	G	69	U	70	C	72	G	73	A	74	U	76	C	77	cWW	cwW
11	HL_1U9S_003	1U9S	0.8417	2		A	RIBONUCLEASE P	G	181	G	182	A	184	A	185	G	186	A	187	C	189	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUAGAAGCAG	4
CAUGGAAGUCG	2
ACUCUGGAU	2
GUCAAUGC	1
GUUCGAAUC	1
GGUAAGAGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUAGAAGCA	4
AUGGAAGUC	2
CUCUGGA	2
UCAAUG	1
UUCGAAU	1
GUAAGAG	1

Release history

Release	3.84	3.85	3.86	3.87
Date	2024-05-22	2024-06-19	2024-07-17	2024-08-14
Status	Updated, 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (10)
T-loop related (1)
Basepair signature: cWW-F-F-F-F-F
Heat map statistics: Min 0.07 | Avg 0.50 | Max 0.90

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