HL_4V7M_133

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7M_133 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.0922

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V7M|1|CA|C|1076
4V7M|1|CA|G|1077
4V7M|1|CA|U|1078
4V7M|1|CA|G|1079
4V7M|1|CA|A|1080
4V7M|1|CA|G|1081

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CE

30S ribosomal protein S5

Chain CH

30S ribosomal protein S8