Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V7M_0011/AA/12:22No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_4V7M_2441/AA/77:92No text annotation
geometric
HL_8KAL_003
HL_75660.5
HL_4V7M_0031/AA/158:163GNRA
geometric
HL_6CZR_074
NA
HL_4V7M_0041/AA/189C:189HNo text annotation
homologous
HL_4LFB_004
HL_48417.5
HL_4V7M_0051/AA/201:216Mini UNCG
homologous
HL_4LFB_005
HL_48778.2
HL_4V7M_0061/AA/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_4V7M_0071/AA/296:301GNRA
homologous
HL_4LFB_007
HL_37824.7
HL_4V7M_0081/AA/320:333No text annotation
homologous
HL_5J7L_008
HL_81205.3
HL_4V7M_0091/AA/342:347UNCG
homologous
HL_6CZR_080
NA
HL_4V7M_0101/AA/379:384GNRA
homologous
HL_4LFB_010
HL_37824.7
HL_4V7M_0111/AA/419:424UNCG
homologous
HL_4LFB_011
HL_34617.5
HL_4V7M_0121/AA/458:473GNRA
homologous
HL_4LFB_012
HL_37824.7
HL_4V7M_0131/AA/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_4V7M_0141/AA/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_4V7M_0151/AA/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_4V7M_0161/AA/726:731GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_4V7M_0171/AA/786:796No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_4V7M_0181/AA/838:848Mini UNCG
homologous
HL_6CZR_089
NA
HL_4V7M_0191/AA/862:867GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_4V7M_0201/AA/897:902GNRA
homologous
HL_6CZR_091
NA
HL_4V7M_0211/AA/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_4V7M_0221/AA/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_4V7M_0231/AA/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.7
HL_4V7M_0241/AA/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_4V7M_0251/AA/1128:1143No text annotation
HL_4V7M_2451/AA/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.7
HL_4V7M_0271/AA/1265:1270GNRA
geometric
HL_3IGI_003
HL_37824.7
HL_4V7M_0281/AA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_4V7M_0291/AA/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_4V7M_0301/AA/1444:1458No text annotation
HL_4V7M_0311/AA/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.7
HL_4V7M_0321/AW/11:23No text annotation
homologous
HL_4V9I_038
HL_68572.1
HL_4V7M_2461/AW/30:38tRNA anticodon loop
homologous
HL_4V9I_039
HL_06059.5
HL_4V7M_0341/AW/52:60T-loop with 2 stacked bulged bases
homologous
HL_5HR6_003
HL_28252.7
HL_4V7M_0351/AX/13:22tRNA D-loop
homologous
HL_5B63_003
HL_20811.4
HL_4V7M_0361/AX/31:39tRNA anticodon loop
homologous
HL_5E81_212
HL_06059.5
HL_4V7M_0371/AX/53:61T-loop with 2 stacked bulged bases
homologous
HL_1QTQ_003
HL_28252.7
HL_4V7M_0381/AY/12:22No text annotation
HL_23010.1
HL_4V7M_0391/AY/29:39No text annotation
HL_36684.4
HL_4V7M_0401/AY/51:61No text annotation
HL_67079.1
HL_4V7M_0411/BA/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_4V7M_0421/BA/87:95No text annotation
homologous
HL_7RQB_002
NA
HL_4V7M_0431/BA/123:128No text annotation
homologous
HL_7RQB_003
NA
HL_4V7M_0441/BA/139:142ANo text annotation
homologous
HL_7RQB_004
NA
HL_4V7M_0461/BA/194:201No text annotation
homologous
HL_7RQB_006
NA
HL_4V7M_0471/BA/225:230No text annotation
homologous
HL_7RQB_007
NA
HL_4V7M_0481/BA/246:252No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_4V7M_0491/BA/271J:271MNo text annotation
HL_4V7M_0501/BA/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4V7M_0511/BA/319:323No text annotation
homologous
HL_7RQB_011
NA
HL_4V7M_0521/BA/327:335T-loop with unstacked turn
homologous
HL_7RQB_012
NA
HL_4V7M_2271/BA/383:391No text annotation
HL_4V7M_0541/BA/410:417No text annotation
homologous
HL_7RQB_014
NA
HL_4V7M_0551/BA/462:467GNRA
homologous
HL_7RQB_015
NA
HL_4V7M_0561/BA/487:493GNRA
homologous
HL_7RQB_016
NA
HL_4V7M_0571/BA/566:575No text annotation
homologous
HL_7RQB_018
NA
HL_4V7M_0581/BA/612:615No text annotation
homologous
HL_7RQB_019
NA
HL_4V7M_0591/BA/629:634GNRA
homologous
HL_7RQB_020
NA
HL_4V7M_0601/BA/641:647GNRA
homologous
HL_4WF9_021
HL_37824.7
HL_4V7M_0611/BA/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4V7M_0621/BA/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4V7M_0631/BA/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_4V7M_0641/BA/826:831No text annotation
homologous
HL_5J7L_157
HL_55195.3
HL_4V7M_0651/BA/883:893No text annotation
HL_4V7M_0661/BA/955:962GNRA
homologous
HL_7RQB_027
NA
HL_4V7M_0671/BA/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_4V7M_0701/BA/1222:1227GNRA
homologous
HL_7RQB_032
NA
HL_4V7M_0711/BA/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_4V7M_0721/BA/1324:1330No text annotation
homologous
HL_7RQB_034
NA
HL_4V7M_0731/BA/1363:1368GNRA
homologous
HL_7RQB_035
NA
HL_4V7M_0741/BA/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_4V7M_0751/BA/1450A:1461Pseudoknot
homologous
HL_7A0S_036
HL_93135.1
HL_4V7M_2471/BA/1492:1498No text annotation
HL_4V7M_0781/BA/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_4V7M_0791/BA/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_4V7M_0801/BA/1631:1635No text annotation
homologous
HL_7RQB_041
NA
HL_4V7M_0811/BA/1691:1696UNCG
geometric
HL_5LYS_002
HL_34617.5
HL_4V7M_2481/BA/1720:1742GNRA
homologous
HL_9DFE_041
HL_37824.7
HL_4V7M_0831/BA/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4V7M_0841/BA/1777:1787No text annotation
homologous
HL_7RQB_045
NA
HL_4V7M_0851/BA/1806:1811GNRA
homologous
HL_7RQB_046
NA
HL_4V7M_0861/BA/1864:1878GNRA
homologous
HL_7RQB_047
NA
HL_4V7M_0871/BA/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4V7M_0881/BA/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_4V7M_0891/BA/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_4V7M_0901/BA/2143:2148No text annotation
homologous
HL_7RQB_051
NA
HL_4V7M_0911/BA/2205:2219No text annotation
geometric
HL_6U8D_003
HL_32346.3
HL_4V7M_0921/BA/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_4V7M_0931/BA/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_4V7M_2491/BA/2303:2313No text annotation
homologous
HL_4WF9_051
NA
HL_4V7M_0951/BA/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4V7M_0961/BA/2355:2362No text annotation
homologous
HL_7RQB_057
NA
HL_4V7M_0971/BA/2374:2379GNRA
homologous
HL_7RQB_058
NA
HL_4V7M_0981/BA/2404:2413No text annotation
homologous
HL_7RQB_059
NA
HL_4V7M_0991/BA/2471:2479No text annotation
homologous
HL_7RQB_060
NA
HL_4V7M_1001/BA/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_4V7M_1011/BA/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_4V7M_1021/BA/2594:2599GNRA
homologous
HL_7A0S_062
HL_37824.7
HL_4V7M_1031/BA/2658:2663GNRA
geometric
HL_5B2P_001
HL_37824.7
HL_4V7M_1041/BA/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_4V7M_1051/BA/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_4V7M_1071/BA/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4V7M_1081/BA/2856:2861GNRA
homologous
HL_7RQB_069
NA
HL_4V7M_2281/BB/34:48No text annotation
homologous
HL_9DFE_067
HL_97756.2
HL_4V7M_1091/BB/38:44No text annotation
geometric
HL_7RQB_070
NA
HL_4V7M_1101/BB/86:91GNRA
homologous
HL_7A0S_070
HL_37824.7
HL_4V7M_1111/CA/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_4V7M_1131/CA/158:163GNRA
homologous
HL_6CZR_074
NA
HL_4V7M_1141/CA/189C:189HNo text annotation
homologous
HL_4LFB_004
HL_48417.5
HL_4V7M_1151/CA/201:216Mini UNCG
homologous
HL_4LFB_005
HL_48778.2
HL_4V7M_1161/CA/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_4V7M_1171/CA/296:301GNRA
homologous
HL_4LFB_007
HL_37824.7
HL_4V7M_1181/CA/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_4V7M_1191/CA/342:347UNCG
homologous
HL_5J7L_009
HL_34617.5
HL_4V7M_1201/CA/379:384GNRA
homologous
HL_4LFB_010
HL_37824.7
HL_4V7M_1211/CA/419:424UNCG
homologous
HL_4LFB_011
HL_34617.5
HL_4V7M_1221/CA/458:473GNRA
homologous
HL_4LFB_012
HL_37824.7
HL_4V7M_1231/CA/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_4V7M_1241/CA/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_4V7M_1251/CA/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_4V7M_1261/CA/726:731GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_4V7M_1271/CA/786:796No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_4V7M_1281/CA/838:848Mini UNCG
homologous
HL_4LFB_018
HL_48778.2
HL_4V7M_1291/CA/862:867GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_4V7M_1301/CA/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_4V7M_1311/CA/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_4V7M_1321/CA/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_4V7M_1331/CA/1076:1081GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_4V7M_1341/CA/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_4V7M_2301/CA/1124:1149No text annotation
HL_4V7M_1351/CA/1128:1143No text annotation
HL_4V7M_2311/CA/1163:1173No text annotation
geometric
HL_8KAL_008
NA
HL_4V7M_1361/CA/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.7
HL_4V7M_1371/CA/1265:1270GNRA
geometric
HL_7A0S_068
HL_37824.7
HL_4V7M_1381/CA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_4V7M_1391/CA/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_4V7M_1401/CA/1445:1457No text annotation
homologous
HL_6CZR_102
NA
HL_4V7M_1411/CA/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.7
HL_4V7M_1421/CW/12:22No text annotation
geometric
HL_4JXZ_001
NA
HL_4V7M_2501/CW/30:38tRNA anticodon loop
homologous
HL_7U2I_104
HL_06059.5
HL_4V7M_1441/CW/52:60T-loop with 2 stacked bulged bases
homologous
HL_1QTQ_003
HL_28252.7
HL_4V7M_1451/CX/13:22tRNA D-loop
homologous
HL_5B63_003
HL_20811.4
HL_4V7M_1461/CX/31:39tRNA anticodon loop
homologous
HL_6CFJ_107
HL_06059.5
HL_4V7M_1471/CX/53:61T-loop with 2 stacked bulged bases
homologous
HL_4YCO_003
HL_28252.7
HL_4V7M_1481/CY/11:23No text annotation
homologous
HL_4V9I_038
HL_68572.1
HL_4V7M_2351/CY/29:39No text annotation
homologous
HL_4V7M_039
HL_36684.4
HL_4V7M_1501/CY/52:60T-loop with 2 stacked bulged bases
geometric
HL_4V90_034
HL_28252.7
HL_4V7M_1511/DA/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_4V7M_1521/DA/87:95No text annotation
HL_4V7M_1531/DA/123:128No text annotation
homologous
HL_7RQB_003
NA
HL_4V7M_1541/DA/139:142ANo text annotation
homologous
HL_7RQB_004
NA
HL_4V7M_1561/DA/194:201No text annotation
homologous
HL_5J7L_139
HL_30068.2
HL_4V7M_1571/DA/224:231No text annotation
HL_4V7M_1581/DA/246:252No text annotation
homologous
HL_7RQB_008
NA
HL_4V7M_1591/DA/271J:271MNo text annotation
HL_4V7M_2371/DA/271:271No text annotation
geometric
HL_361D_002
HL_13963.3
HL_4V7M_1601/DA/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4V7M_1611/DA/319:323No text annotation
homologous
HL_7A0S_011
HL_75660.5
HL_4V7M_1621/DA/327:335T-loop with unstacked turn
homologous
HL_4WF9_012
HL_27670.2
HL_4V7M_2511/DA/383:391No text annotation
HL_4V7M_1641/DA/410:417No text annotation
homologous
HL_7RQB_014
NA
HL_4V7M_1651/DA/462:467GNRA
homologous
HL_7RQB_015
NA
HL_4V7M_1661/DA/487:493GNRA
homologous
HL_4WF9_016
HL_37824.7
HL_4V7M_1681/DA/566:575No text annotation
geometric
HL_7RQB_018
NA
HL_4V7M_1691/DA/612:615No text annotation
homologous
HL_7RQB_019
NA
HL_4V7M_1701/DA/629:634GNRA
homologous
HL_7RQB_020
NA
HL_4V7M_1711/DA/641:647GNRA
homologous
HL_4WF9_021
HL_37824.7
HL_4V7M_1721/DA/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4V7M_1731/DA/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4V7M_1741/DA/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_4V7M_1751/DA/826:831No text annotation
homologous
HL_7A0S_024
HL_55195.3
HL_4V7M_2521/DA/884:892No text annotation
HL_4V7M_1771/DA/955:962GNRA
homologous
HL_7RQB_027
NA
HL_4V7M_1781/DA/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_4V7M_1811/DA/1222:1227GNRA
homologous
HL_7RQB_032
NA
HL_4V7M_1821/DA/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_4V7M_1831/DA/1324:1330No text annotation
homologous
HL_7RQB_034
NA
HL_4V7M_1841/DA/1363:1368GNRA
homologous
HL_7RQB_035
NA
HL_4V7M_1851/DA/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_4V7M_1861/DA/1450A:1461Pseudoknot
homologous
HL_7A0S_036
HL_93135.1
HL_4V7M_1871/DA/1489:1500No text annotation
HL_4V7M_1891/DA/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_4V7M_1901/DA/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_4V7M_1911/DA/1631:1635No text annotation
homologous
HL_7RQB_041
NA
HL_4V7M_1921/DA/1691:1696UNCG
geometric
HL_4LFB_011
HL_34617.5
HL_4V7M_2531/DA/1719:1743No text annotation
homologous
HL_5J7L_214
HL_08100.1
HL_4V7M_1941/DA/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4V7M_1951/DA/1777:1787No text annotation
homologous
HL_7RQB_045
NA
HL_4V7M_1961/DA/1806:1811GNRA
homologous
HL_7RQB_046
NA
HL_4V7M_1971/DA/1864:1878GNRA
homologous
HL_7RQB_047
NA
HL_4V7M_1981/DA/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4V7M_1991/DA/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_4V7M_2001/DA/1992:1996No text annotation
HL_4V7M_2011/DA/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_4V7M_2031/DA/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_4V7M_2041/DA/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_4V7M_2541/DA/2303:2313No text annotation
homologous
HL_4WF9_051
NA
HL_4V7M_2061/DA/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4V7M_2071/DA/2355:2362No text annotation
homologous
HL_7RQB_057
NA
HL_4V7M_2081/DA/2374:2379GNRA
homologous
HL_7RQB_058
NA
HL_4V7M_2091/DA/2404:2413No text annotation
homologous
HL_7RQB_059
NA
HL_4V7M_2101/DA/2471:2479No text annotation
homologous
HL_5J7L_193
HL_32735.2
HL_4V7M_2111/DA/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_4V7M_2121/DA/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_4V7M_2131/DA/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_4V7M_2411/DA/2652:2668No text annotation
HL_4V7M_2141/DA/2658:2663GNRA
homologous
HL_7RQB_064
NA
HL_4V7M_2151/DA/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_4V7M_2161/DA/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_4V7M_2181/DA/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4V7M_2191/DA/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.7
HL_4V7M_2421/DB/34:48No text annotation
homologous
HL_9DFE_067
HL_97756.2

Problematic loops

#loop idProblemSequence
HL_4V7M_002No text annotation
HL_4V7M_222No text annotation
HL_4V7M_223GNRA with near cWW
HL_4V7M_224tRNA D-loop
HL_4V7M_225tRNA D-loop
HL_4V7M_026GNRA with extra cWW
HL_4V7M_033No text annotation
HL_4V7M_226No text annotation
HL_4V7M_045No text annotation
HL_4V7M_053No text annotation
HL_4V7M_068No text annotation
HL_4V7M_069No text annotation
HL_4V7M_076No text annotation
HL_4V7M_077No text annotation
HL_4V7M_082No text annotation
HL_4V7M_094No text annotation
HL_4V7M_106No text annotation
HL_4V7M_112No text annotation
HL_4V7M_229GNRA with near cWW
HL_4V7M_232No text annotation
HL_4V7M_233No text annotation
HL_4V7M_143No text annotation
HL_4V7M_234No text annotation
HL_4V7M_149No text annotation
HL_4V7M_236No text annotation
HL_4V7M_155No text annotation
HL_4V7M_163No text annotation
HL_4V7M_167No text annotation
HL_4V7M_238No text annotation
HL_4V7M_176No text annotation
HL_4V7M_179No text annotation
HL_4V7M_180No text annotation
HL_4V7M_239No text annotation
HL_4V7M_188No text annotation
HL_4V7M_193No text annotation
HL_4V7M_240No text annotation
HL_4V7M_202No text annotation
HL_4V7M_205No text annotation
HL_4V7M_217No text annotation
HL_4V7M_220No text annotation
HL_4V7M_243No text annotation
HL_4V7M_221GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V7M_0011/AA/30:32,
1/AA/552:553
Single bulged G
homologous
IL_4LFB_001
IL_00225.13
IL_4V7M_0021/AA/44:45,
1/AA/396:398
Single bulged A
homologous
IL_4LFB_002
IL_31462.5
IL_4V7M_0031/AA/47:52,
1/AA/359:361
No text annotation
homologous
IL_4LFB_003
IL_14177.2
IL_4V7M_0041/AA/54:56,
1/AA/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_51454.2
IL_4V7M_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
homologous
IL_5J7L_005
IL_82107.4
IL_4V7M_0061/AA/67:69,
1/AA/100:102
Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_87907.2
IL_4V7M_0071/AA/129:131,
1/AA/231:232
Multiple bulged bases
homologous
IL_4LFB_007
IL_33761.2
IL_4V7M_0081/AA/132:136,
1/AA/227:230
No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_4V7M_0091/AA/148:153,
1/AA/168:174
tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_12745.1
IL_4V7M_0101/AA/186:188,
1/AA/189L:191
Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_87907.2
IL_4V7M_0111/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_4V7M_0121/AA/249:252,
1/AA/274:275
No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_4V7M_0131/AA/292:293,
1/AA/304:308
C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_4V7M_0141/AA/367:369,
1/AA/392:393
Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_4V7M_0151/AA/371:375,
1/AA/389:390
C-loop
geometric
IL_4LFB_015
IL_03109.3
IL_4V7M_0161/AA/375:376,
1/AA/387:389
Single bulged G
homologous
IL_4LFB_016
IL_00225.13
IL_4V7M_0171/AA/409:416,
1/AA/427:433
No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_4V7M_0181/AA/446:450,
1/AA/483:488
6x5 Sarcin-Ricin; G-bulge
homologous
IL_4LFB_018
IL_88269.4
IL_4V7M_0191/AA/450:455,
1/AA/476:483
No text annotation
geometric
IL_4LFB_019
IL_31561.1
IL_4V7M_0201/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_4V7M_0211/AA/515:521,
1/AA/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_4V7M_0221/AA/569:575,
1/AA/880:881
No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_4V7M_0231/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
homologous
IL_4LFB_023
IL_17136.7
IL_4V7M_0241/AA/594:596,
1/AA/644:645
Major groove platform
homologous
IL_4LFB_024
IL_48076.6
IL_4V7M_0251/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_4V7M_3961/AA/605:612,
1/AA/628:633
No text annotation
homologous
IL_4LFB_026
IL_78349.3
IL_4V7M_0271/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
homologous
IL_5J7L_031
IL_50694.7
IL_4V7M_0281/AA/657:658,
1/AA/747:749
Major groove platform
homologous
IL_4LFB_028
IL_48076.6
IL_4V7M_0291/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_85033.2
IL_4V7M_3651/AA/673:677,
1/AA/713:717
Triple non-canonical cWW pairs
homologous
IL_5J7L_361
IL_49751.4
IL_4V7M_0311/AA/683:688,
1/AA/699:707
Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_4V7M_0321/AA/774:778,
1/AA/804:805
Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_4V7M_0331/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_4V7M_0341/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_4V7M_3971/AA/922:923,
1/AA/1393:1395
Single bulged A
homologous
IL_5J7L_039
IL_31462.5
IL_4V7M_0361/AA/925:927,
1/AA/1390:1391
Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_4V7M_0371/AA/933:935,
1/AA/1380:1384
Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_4V7M_0381/AA/953:954,
1/AA/1226:1228
Minor groove platform
homologous
IL_4LFB_038
IL_51454.2
IL_4V7M_0391/AA/993:997,
1/AA/1044:1045
Minor groove platform
geometric
IL_4LFB_039
IL_47078.3
IL_4V7M_0431/AA/1048:1050,
1/AA/1208:1209
Single bulged U
homologous
IL_4LFB_042
IL_89505.4
IL_4V7M_0441/AA/1052:1056,
1/AA/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_4V7M_0451/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_4V7M_0461/AA/1060:1061,
1/AA/1195:1197
Single bulged U
geometric
IL_4LFB_046
IL_89505.4
IL_4V7M_0471/AA/1061:1063,
1/AA/1193:1195
Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_28037.2
IL_4V7M_0481/AA/1124:1128,
1/AA/1143:1149
No text annotation
homologous
IL_4LFB_048
IL_85222.1
IL_4V7M_0491/AA/1247:1253,
1/AA/1284:1290
No text annotation
homologous
IL_4LFB_051
IL_09129.2
IL_4V7M_0501/AA/1255:1259,
1/AA/1276:1282
No text annotation
IL_4V7M_0511/AA/1259:1262,
1/AA/1273:1276
Double sheared
geometric
IL_5J7L_256
IL_09705.15
IL_4V7M_0531/AA/1303:1308,
1/AA/1329:1334
No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_4V7M_0541/AA/1399:1401,
1/AA/1501:1504
No text annotation
homologous
IL_4LFB_056
IL_61438.4
IL_4V7M_0551/AA/1401:1404,
1/AA/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_4V7M_0561/AA/1405:1407,
1/AA/1494:1496
Isolated non-canonical cWW pair
geometric
IL_5MWI_007
NA
IL_4V7M_0571/AA/1407:1409,
1/AA/1491:1494
Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_4V7M_0581/AA/1412:1414,
1/AA/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_4V7M_0591/AA/1416:1419,
1/AA/1481:1484
Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_4V7M_0601/AA/1431:1435,
1/AA/1466:1469
UAA/GAN variation
geometric
IL_4LFB_062
IL_77691.5
IL_4V7M_0611/AA/1435:1437,
1/AA/1464:1466
Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_87907.2
IL_4V7M_0621/AA/1440:1443,
1/AA/1459:1461
No text annotation
homologous
IL_4LFB_064
IL_49061.1
IL_4V7M_0631/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_4V7M_0641/BA/36:37,
1/BA/442:444
Single bulged A
geometric
IL_7A0S_002
IL_31462.5
IL_4V7M_0661/BA/42:43,
1/BA/434:436
Minor groove platform
homologous
IL_7RQB_003
NA
IL_4V7M_0671/BA/81:85,
1/BA/97:105
Kink-turn
homologous
IL_7RQB_004
NA
IL_4V7M_0681/BA/183:184,
1/BA/212:214
Single stack bend
homologous
IL_7RQB_005
NA
IL_4V7M_0691/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_4V7M_0701/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_4V7M_0711/BA/271I:271J,
1/BA/271M:271O
Single bulged U
geometric
IL_5TBW_125
NA
IL_4V7M_3671/BA/272:272,
1/BA/363:364
Major groove platform
homologous
IL_9DFE_008
IL_48076.6
IL_4V7M_0741/BA/280:284,
1/BA/357:360
tSH-tHW
homologous
IL_7RQB_011
NA
IL_4V7M_0751/BA/288:290,
1/BA/350:353
Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA
IL_4V7M_0761/BA/293:295,
1/BA/343:347
No text annotation
homologous
IL_7RQB_013
NA
IL_4V7M_0771/BA/481:484,
1/BA/496:509
No text annotation
homologous
IL_7RQB_014
NA
IL_4V7M_0791/BA/564:566,
1/BA/575:577
Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_07785.1
IL_4V7M_0801/BA/606:610,
1/BA/618:622
AAA cross-strand stack
homologous
IL_7RQB_016
NA
IL_4V7M_0811/BA/672:674,
1/BA/806:808
No text annotation
homologous
IL_7RQB_017
NA
IL_4V7M_0821/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
geometric
IL_4WF9_021
IL_54041.2
IL_4V7M_0831/BA/697:698,
1/BA/763:765
Single bulged A
geometric
IL_7RQB_019
NA
IL_4V7M_0841/BA/702:703,
1/BA/728:730
Single bulged G
homologous
IL_7RQB_020
NA
IL_4V7M_0851/BA/703:707,
1/BA/724:728
Triple sheared
geometric
IL_7RQB_021
NA
IL_4V7M_0861/BA/738:741,
1/BA/756:758
Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_4V7M_0871/BA/775:777,
1/BA/787:791
Multiple bulged bases
homologous
IL_7A0S_021
IL_06549.2
IL_4V7M_0881/BA/837:838,
1/BA/940:942
Single stack bend
homologous
IL_7RQB_024
NA
IL_4V7M_0891/BA/844:846,
1/BA/931:934
Intercalated cWW
homologous
IL_7RQB_025
NA
IL_4V7M_3681/BA/844:850,
1/BA/927:934
No text annotation
homologous
IL_9DFE_024
IL_68243.1
IL_4V7M_0901/BA/846:850,
1/BA/927:931
No text annotation
geometric
IL_7RQB_026
NA
IL_4V7M_3691/BA/858:862,
1/BA/915:919
No text annotation
homologous
IL_9DFE_026
IL_38862.4
IL_4V7M_0921/BA/862:863,
1/BA/913:915
Minor groove platform
homologous
IL_7A0S_028
IL_51454.2
IL_4V7M_0931/BA/864:868,
1/BA/909:912
C-loop
homologous
IL_7RQB_029
NA
IL_4V7M_0951/BA/875:879,
1/BA/898:902
Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_4V7M_0961/BA/880:881,
1/BA/895:897
Single bulged A
homologous
IL_7RQB_033
NA
IL_4V7M_0971/BA/952:954,
1/BA/963:965
No text annotation
homologous
IL_7RQB_034
NA
IL_4V7M_0981/BA/994:996,
1/BA/1159:1160
Single bulged C
homologous
IL_5J7L_276
IL_61258.15
IL_4V7M_0991/BA/998:1002,
1/BA/1153:1157
UAA/GAN
homologous
IL_7RQB_036
NA
IL_4V7M_1001/BA/1004:1011,
1/BA/1150:1151
SSU/LSU pseudoknot
homologous
IL_7RQB_037
NA
IL_4V7M_1011/BA/1011:1013,
1/BA/1149:1150
Single bulged U
geometric
IL_7RQB_038
NA
IL_4V7M_1021/BA/1018:1024,
1/BA/1140:1144
Kink-turn related
homologous
IL_4WF9_039
IL_57188.5
IL_4V7M_1031/BA/1024:1030,
1/BA/1124:1140
No text annotation
geometric
IL_7RQB_040
NA
IL_4V7M_1041/BA/1031:1034,
1/BA/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_4V7M_1061/BA/1196:1198,
1/BA/1247:1250
Isolated cWS basepair
homologous
IL_7RQB_045
NA
IL_4V7M_1071/BA/1202:1206,
1/BA/1240:1243
No text annotation
homologous
IL_7RQB_046
NA
IL_4V7M_1081/BA/1208:1215,
1/BA/1234:1238
Kink-turn
homologous
IL_7RQB_047
NA
IL_4V7M_1091/BA/1219:1221,
1/BA/1229:1230
Single bulged A
homologous
IL_7RQB_048
NA
IL_4V7M_1101/BA/1262:1269,
1/BA/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA
IL_4V7M_1111/BA/1310:1313,
1/BA/1603:1604
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4V7M_1121/BA/1319:1323,
1/BA/1331:1333
C-loop
homologous
IL_7RQB_051
NA
IL_4V7M_1131/BA/1351:1355,
1/BA/1376:1380
UAA/GAN
homologous
IL_7RQB_052
NA
IL_4V7M_1141/BA/1357:1361,
1/BA/1370:1374
tSH-tHW-tHS
homologous
IL_4WF9_052
IL_17136.7
IL_4V7M_1151/BA/1415:1416,
1/BA/1582:1587
No text annotation
homologous
IL_7RQB_054
NA
IL_4V7M_1161/BA/1417:1421,
1/BA/1577:1581
UAA/GAN
homologous
IL_7RQB_055
NA
IL_4V7M_1171/BA/1433:1435,
1/BA/1557:1560
Isolated tWW turn
homologous
IL_7RQB_056
NA
IL_4V7M_1181/BA/1437:1440,
1/BA/1551:1555
tSH-tHW
homologous
IL_7RQB_057
NA
IL_4V7M_1191/BA/1448:1450,
1/BA/1462:1463
Single stack bend
homologous
IL_7RQB_058
NA
IL_4V7M_1201/BA/1469:1473,
1/BA/1518:1523
UAA/GAN
homologous
IL_7RQB_060
NA
IL_4V7M_1221/BA/1481:1482,
1/BA/1506:1510
No text annotation
geometric
IL_9DFE_060
IL_46086.1
IL_4V7M_3711/BA/1481:1486,
1/BA/1503:1510
No text annotation
IL_4V7M_1241/BA/1488:1491,
1/BA/1499:1501
Isolated non-canonical cWW with bulges
geometric
IL_5ML7_010
IL_07785.1
IL_4V7M_1251/BA/1651:1656,
1/BA/2004:2006
No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_4V7M_1261/BA/1663:1665,
1/BA/1995:1997
Isolated tWW turn
homologous
IL_7RQB_065
NA
IL_4V7M_1271/BA/1666:1669,
1/BA/1993:1994
Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA
IL_4V7M_3721/BA/1666:1674,
1/BA/1990:1994
No text annotation
homologous
IL_9DFE_066
IL_22854.4
IL_4V7M_1281/BA/1669:1674,
1/BA/1990:1993
Intercalated tWH
geometric
IL_7RQB_067
NA
IL_4V7M_1291/BA/1686:1691,
1/BA/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_4V7M_1301/BA/1770:1771,
1/BA/1980:1982
Single bulged A
homologous
IL_7RQB_069
NA
IL_4V7M_1311/BA/1798:1804,
1/BA/1813:1821
Kink-turn related
homologous
IL_7RQB_070
NA
IL_4V7M_1321/BA/1837:1840,
1/BA/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_7RQB_071
NA
IL_4V7M_1331/BA/1841:1842,
1/BA/1898:1901
Major groove intercalation
homologous
IL_7A0S_067
IL_66635.5
IL_4V7M_1341/BA/1846:1849,
1/BA/1893:1894
Minor groove platform
homologous
IL_7RQB_073
NA
IL_4V7M_1351/BA/1851:1855,
1/BA/1887:1891
UAA/GAN with extra pair
homologous
IL_7RQB_074
NA
IL_4V7M_1361/BA/1856:1860,
1/BA/1882:1886
Triple sheared
homologous
IL_7RQB_075
NA
IL_4V7M_1371/BA/1933:1934,
1/BA/1964:1967
Bulged stacked bases
homologous
IL_5J7L_318
IL_22551.3
IL_4V7M_1381/BA/1934:1945,
1/BA/1961:1964
No text annotation
geometric
IL_4WF9_077
IL_42218.2
IL_4V7M_1391/BA/2050:2052,
1/BA/2617:2618
Major groove platform
homologous
IL_7RQB_078
NA
IL_4V7M_1401/BA/2054:2057,
1/BA/2611:2615
No text annotation
homologous
IL_9DFE_079
IL_70335.1
IL_4V7M_1411/BA/2067:2069,
1/BA/2442:2443
Single bulged U
homologous
IL_7RQB_080
NA
IL_4V7M_1421/BA/2070:2071,
1/BA/2438:2441
Minor groove platform
homologous
IL_7RQB_081
NA
IL_4V7M_1431/BA/2081:2083,
1/BA/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4V7M_1441/BA/2085:2087,
1/BA/2232:2234
No text annotation
homologous
IL_7RQB_083
NA
IL_4V7M_1481/BA/2110:2120,
1/BA/2178:2179
No text annotation
geometric
IL_1MZP_002
IL_32056.1
IL_4V7M_1491/BA/2124:2127,
1/BA/2161:2174
No text annotation
homologous
IL_3U4M_003
IL_75283.2
IL_4V7M_1501/BA/2129:2136,
1/BA/2155:2159
Kink-turn
geometric
IL_5J7L_330
IL_70923.9
IL_4V7M_1511/BA/2297:2299,
1/BA/2317:2321
Isolated tHS basepair with bulges
geometric
IL_7RQB_088
NA
IL_4V7M_1521/BA/2350:2353,
1/BA/2364:2367
Double sheared
homologous
IL_7RQB_089
NA
IL_4V7M_1541/BA/2401:2403,
1/BA/2414:2415
Major groove platform
homologous
IL_7A0S_082
IL_48076.6
IL_4V7M_1551/BA/2453:2454,
1/BA/2498:2500
Single stack bend
geometric
IL_7A0S_083
IL_26793.1
IL_4V7M_1561/BA/2454:2455,
1/BA/2496:2498
Major groove platform
homologous
IL_7RQB_092
NA
IL_4V7M_1571/BA/2457:2459,
1/BA/2493:2494
Major groove platform
homologous
IL_4WF9_091
IL_48076.6
IL_4V7M_1581/BA/2459:2461,
1/BA/2489:2493
Major groove minor groove platform with extra cWW
geometric
IL_4WF9_092
IL_51387.2
IL_4V7M_1591/BA/2466:2470,
1/BA/2480:2484
Triple sheared
homologous
IL_7RQB_095
NA
IL_4V7M_1601/BA/2507:2508,
1/BA/2580:2582
Major groove platform
homologous
IL_7RQB_096
NA
IL_4V7M_1611/BA/2510:2512,
1/BA/2574:2578
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_4V7M_1621/BA/2512:2513,
1/BA/2571:2574
Multiple bulged bases
geometric
IL_7RQB_098
NA
IL_4V7M_1631/BA/2522:2523,
1/BA/2540:2543
Major groove platform with intercalation
homologous
IL_4WF9_097
IL_02555.1
IL_4V7M_1651/BA/2591:2592,
1/BA/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA
IL_4V7M_1661/BA/2636:2640,
1/BA/2774:2782
tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_4V7M_1671/BA/2652:2658,
1/BA/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_5J7L_346
IL_16458.4
IL_4V7M_1681/BA/2680:2684,
1/BA/2725:2727
C-loop
homologous
IL_7RQB_104
NA
IL_4V7M_1701/BA/2687:2691,
1/BA/2718:2722
No text annotation
homologous
IL_7RQB_105
NA
IL_4V7M_1711/BA/2695:2696,
1/BA/2711:2714
Multiple bulged bases
homologous
IL_7RQB_106
NA
IL_4V7M_1721/BA/2737:2742,
1/BA/2762:2767
UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA
IL_4V7M_1731/BA/2838:2839,
1/BA/2878:2880
Single bulged C
homologous
IL_7RQB_108
NA
IL_4V7M_1741/BA/2843:2846,
1/BA/2870:2874
No text annotation
homologous
IL_7RQB_109
NA
IL_4V7M_1751/BA/2847:2852,
1/BA/2865:2869
tHS double platform
homologous
IL_7RQB_110
NA
IL_4V7M_1761/BB/17:18,
1/BB/65:67
Major groove intercalation
homologous
IL_7RQB_111
NA
IL_4V7M_1771/BB/23:28,
1/BB/56:60
No text annotation
homologous
IL_7RQB_112
NA
IL_4V7M_3991/BB/30:31,
1/BB/51:54
Major groove minor groove platform; mini C-loop
homologous
IL_4WF9_126
IL_68140.4
IL_4V7M_1791/BB/34:38,
1/BB/44:48
Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_4V7M_1801/BB/71:79,
1/BB/98:106
Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_4V7M_1831/CA/30:32,
1/CA/552:553
Single bulged G
geometric
IL_6CZR_113
NA
IL_4V7M_1841/CA/44:45,
1/CA/396:398
Single bulged A
homologous
IL_4LFB_002
IL_31462.5
IL_4V7M_1851/CA/47:52,
1/CA/359:361
No text annotation
homologous
IL_4LFB_003
IL_14177.2
IL_4V7M_1861/CA/54:56,
1/CA/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_51454.2
IL_4V7M_1871/CA/63:66,
1/CA/103:104
Multiple bulged bases
homologous
IL_5J7L_005
IL_82107.4
IL_4V7M_4001/CA/67:71,
1/CA/98:102
No text annotation
IL_4V7M_1891/CA/129:131,
1/CA/231:232
Multiple bulged bases
homologous
IL_4LFB_007
IL_33761.2
IL_4V7M_1901/CA/132:136,
1/CA/227:230
No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_4V7M_1911/CA/148:153,
1/CA/168:174
tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_12745.1
IL_4V7M_1921/CA/186:188,
1/CA/189L:191
Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_87907.2
IL_4V7M_1931/CA/242:247,
1/CA/277:284
Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_4V7M_1941/CA/249:252,
1/CA/274:275
No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_4V7M_1951/CA/292:293,
1/CA/304:308
C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_4V7M_1961/CA/367:369,
1/CA/392:393
Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_4V7M_1971/CA/371:375,
1/CA/389:390
C-loop
homologous
IL_4LFB_015
IL_03109.3
IL_4V7M_1981/CA/375:376,
1/CA/387:389
Single bulged G
geometric
IL_4LFB_016
IL_00225.13
IL_4V7M_1991/CA/409:416,
1/CA/427:433
No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_4V7M_2001/CA/446:450,
1/CA/483:488
6x5 Sarcin-Ricin; G-bulge
geometric
IL_4LFB_018
IL_88269.4
IL_4V7M_2011/CA/450:455,
1/CA/476:483
No text annotation
homologous
IL_4LFB_019
IL_31561.1
IL_4V7M_2021/CA/504:511,
1/CA/540:541
SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_4V7M_2031/CA/515:521,
1/CA/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_4V7M_2041/CA/569:575,
1/CA/880:881
No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_4V7M_2051/CA/580:584,
1/CA/757:761
tSH-tHW-tHS
homologous
IL_4LFB_023
IL_17136.7
IL_4V7M_2061/CA/594:596,
1/CA/644:645
Major groove platform
homologous
IL_4LFB_024
IL_48076.6
IL_4V7M_2071/CA/597:598,
1/CA/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_4V7M_4011/CA/605:612,
1/CA/628:633
No text annotation
homologous
IL_4LFB_026
IL_78349.3
IL_4V7M_2091/CA/654:655,
1/CA/751:754
Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.7
IL_4V7M_2101/CA/657:658,
1/CA/747:749
Major groove platform
homologous
IL_4LFB_028
IL_48076.6
IL_4V7M_2111/CA/662:666,
1/CA/740:743
Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_85033.2
IL_4V7M_3771/CA/673:677,
1/CA/713:717
Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_49751.4
IL_4V7M_2131/CA/683:688,
1/CA/699:707
Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_4V7M_2141/CA/774:778,
1/CA/804:805
Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_4V7M_2151/CA/779:783,
1/CA/799:803
tSH-tHW-tHS
homologous
IL_5J7L_037
IL_17136.7
IL_4V7M_2161/CA/887:894,
1/CA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_4V7M_2171/CA/922:923,
1/CA/1393:1395
Single bulged A
homologous
IL_5J7L_039
IL_31462.5
IL_4V7M_2181/CA/925:927,
1/CA/1390:1391
Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_4V7M_4021/CA/933:935,
1/CA/1380:1384
Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_4V7M_4031/CA/953:954,
1/CA/1226:1228
Minor groove platform
homologous
IL_5J7L_042
IL_51454.2
IL_4V7M_3791/CA/993:1007,
1/CA/1022:1045
No text annotation
IL_4V7M_2211/CA/1048:1050,
1/CA/1208:1209
Single bulged U
homologous
IL_4LFB_042
IL_89505.4
IL_4V7M_2221/CA/1052:1056,
1/CA/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_4V7M_2231/CA/1057:1058,
1/CA/1199:1203
Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_4V7M_2241/CA/1060:1061,
1/CA/1195:1197
Single bulged U
geometric
IL_4LFB_046
IL_89505.4
IL_4V7M_4041/CA/1060:1063,
1/CA/1193:1197
Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_4V7M_2251/CA/1061:1063,
1/CA/1193:1195
Isolated non-canonical cWW pair
homologous
IL_4LFB_047
IL_28037.2
IL_4V7M_2261/CA/1123:1128,
1/CA/1143:1150
No text annotation
IL_4V7M_2271/CA/1247:1253,
1/CA/1284:1290
No text annotation
homologous
IL_4LFB_051
IL_09129.2
IL_4V7M_2281/CA/1255:1258,
1/CA/1277:1282
180 degree turn
geometric
IL_4LFB_052
IL_11344.2
IL_4V7M_2291/CA/1259:1262,
1/CA/1273:1276
Double sheared
geometric
IL_5J7L_256
IL_09705.15
IL_4V7M_2311/CA/1303:1308,
1/CA/1329:1334
No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_4V7M_2331/CA/1399:1401,
1/CA/1501:1504
No text annotation
geometric
IL_4V88_463
NA
IL_4V7M_2341/CA/1401:1404,
1/CA/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_4V7M_2351/CA/1405:1407,
1/CA/1494:1496
Isolated non-canonical cWW pair
geometric
IL_5VCI_002
IL_87907.2
IL_4V7M_2361/CA/1407:1409,
1/CA/1491:1494
Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_4V7M_2371/CA/1412:1414,
1/CA/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_4V7M_2381/CA/1416:1419,
1/CA/1481:1484
Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_4V7M_2391/CA/1431:1435,
1/CA/1466:1469
UAA/GAN variation
homologous
IL_4LFB_062
IL_77691.5
IL_4V7M_2401/CA/1435:1437,
1/CA/1464:1466
Isolated non-canonical cWW pair
geometric
IL_4LFB_063
IL_87907.2
IL_4V7M_2411/CA/1440:1443,
1/CA/1459:1461
No text annotation
homologous
IL_4LFB_064
IL_49061.1
IL_4V7M_2451/DA/24:30,
1/DA/510:516
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_4V7M_2461/DA/36:37,
1/DA/442:444
Single bulged A
homologous
IL_7A0S_002
IL_31462.5
IL_4V7M_2471/DA/42:43,
1/DA/434:436
Minor groove platform
homologous
IL_7RQB_003
NA
IL_4V7M_2481/DA/81:85,
1/DA/97:105
Kink-turn
homologous
IL_7RQB_004
NA
IL_4V7M_2491/DA/183:184,
1/DA/212:214
Single stack bend
homologous
IL_7RQB_005
NA
IL_4V7M_2501/DA/188:194,
1/DA/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_4V7M_2511/DA/239:245,
1/DA/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_4V7M_2521/DA/271I:271J,
1/DA/271M:271O
No text annotation
IL_4V7M_4051/DA/272D:272E,
1/DA/363E:364
Major groove platform
homologous
IL_9DFE_008
IL_48076.6
IL_4V7M_2561/DA/280:284,
1/DA/357:360
tSH-tHW
homologous
IL_7RQB_011
NA
IL_4V7M_2571/DA/288:290,
1/DA/350:353
Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA
IL_4V7M_2581/DA/293:295,
1/DA/343:347
No text annotation
homologous
IL_7RQB_013
NA
IL_4V7M_2591/DA/481:484,
1/DA/496:509
No text annotation
homologous
IL_7RQB_014
NA
IL_4V7M_2611/DA/564:566,
1/DA/575:577
Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_07785.1
IL_4V7M_2621/DA/606:610,
1/DA/618:622
AAA cross-strand stack
homologous
IL_7RQB_016
NA
IL_4V7M_2631/DA/672:674,
1/DA/806:808
Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_87907.2
IL_4V7M_2641/DA/674:678,
1/DA/799:806
tHW-tHW cross-strand stack
geometric
IL_4WF9_021
IL_54041.2
IL_4V7M_2651/DA/697:698,
1/DA/763:765
Single bulged A
homologous
IL_7RQB_019
NA
IL_4V7M_2661/DA/702:703,
1/DA/728:730
Single bulged G
geometric
IL_7RQB_020
NA
IL_4V7M_2671/DA/703:707,
1/DA/724:728
Triple sheared
homologous
IL_7RQB_021
NA
IL_4V7M_2681/DA/738:741,
1/DA/756:758
Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_4V7M_2691/DA/775:777,
1/DA/787:791
Multiple bulged bases
homologous
IL_7A0S_021
IL_06549.2
IL_4V7M_2701/DA/837:838,
1/DA/940:942
Single stack bend
homologous
IL_7RQB_024
NA
IL_4V7M_2711/DA/844:846,
1/DA/931:934
Intercalated cWW
geometric
IL_7RQB_025
NA
IL_4V7M_3851/DA/844:850,
1/DA/927:934
No text annotation
homologous
IL_9DFE_024
IL_68243.1
IL_4V7M_2721/DA/846:850,
1/DA/927:931
No text annotation
homologous
IL_7RQB_026
NA
IL_4V7M_3861/DA/858:862,
1/DA/915:919
No text annotation
homologous
IL_9DFE_026
IL_38862.4
IL_4V7M_2741/DA/862:863,
1/DA/913:915
Minor groove platform
geometric
IL_4V9F_034
IL_51454.2
IL_4V7M_2751/DA/864:868,
1/DA/909:912
C-loop
homologous
IL_7RQB_029
NA
IL_4V7M_2771/DA/875:879,
1/DA/898:902
Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_4V7M_2781/DA/880:881,
1/DA/895:897
Single bulged A
homologous
IL_7RQB_033
NA
IL_4V7M_2791/DA/952:954,
1/DA/963:965
No text annotation
homologous
IL_7RQB_034
NA
IL_4V7M_2811/DA/994:996,
1/DA/1159:1160
Single bulged C
homologous
IL_5J7L_276
IL_61258.15
IL_4V7M_2821/DA/998:1002,
1/DA/1153:1157
UAA/GAN
homologous
IL_7RQB_036
NA
IL_4V7M_2831/DA/1004:1011,
1/DA/1150:1151
SSU/LSU pseudoknot
homologous
IL_7RQB_037
NA
IL_4V7M_2841/DA/1011:1013,
1/DA/1149:1150
Single bulged U
geometric
IL_7RQB_038
NA
IL_4V7M_2851/DA/1018:1024,
1/DA/1140:1144
Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_4V7M_2861/DA/1024:1030,
1/DA/1124:1140
No text annotation
geometric
IL_7RQB_040
NA
IL_4V7M_2871/DA/1031:1034,
1/DA/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_4V7M_2891/DA/1196:1198,
1/DA/1247:1250
Isolated cWS basepair
homologous
IL_7RQB_045
NA
IL_4V7M_2901/DA/1202:1206,
1/DA/1240:1243
No text annotation
homologous
IL_7RQB_046
NA
IL_4V7M_2911/DA/1208:1215,
1/DA/1234:1238
Kink-turn
homologous
IL_7RQB_047
NA
IL_4V7M_2921/DA/1219:1221,
1/DA/1229:1230
Single bulged A
homologous
IL_7RQB_048
NA
IL_4V7M_2931/DA/1262:1269,
1/DA/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA
IL_4V7M_2941/DA/1310:1313,
1/DA/1603:1604
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4V7M_4071/DA/1319:1323,
1/DA/1331:1333
C-loop
homologous
IL_9DFE_050
IL_63596.11
IL_4V7M_2961/DA/1351:1355,
1/DA/1376:1380
UAA/GAN
homologous
IL_7RQB_052
NA
IL_4V7M_2971/DA/1357:1361,
1/DA/1370:1374
tSH-tHW-tHS
homologous
IL_4WF9_052
IL_17136.7
IL_4V7M_2991/DA/1415:1416,
1/DA/1582:1587
No text annotation
homologous
IL_7RQB_054
NA
IL_4V7M_3001/DA/1417:1421,
1/DA/1577:1581
UAA/GAN
homologous
IL_7RQB_055
NA
IL_4V7M_3011/DA/1433:1435,
1/DA/1557:1560
Isolated tWW turn
homologous
IL_7RQB_056
NA
IL_4V7M_3021/DA/1437:1440,
1/DA/1551:1555
tSH-tHW
homologous
IL_7RQB_057
NA
IL_4V7M_3031/DA/1448:1450,
1/DA/1462:1463
Single stack bend
homologous
IL_7RQB_058
NA
IL_4V7M_3041/DA/1469:1473,
1/DA/1518:1523
UAA/GAN
homologous
IL_7RQB_060
NA
IL_4V7M_3051/DA/1481:1482,
1/DA/1506:1510
No text annotation
geometric
IL_7RQB_061
NA
IL_4V7M_4081/DA/1651:1656,
1/DA/2004:2006
No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_4V7M_3871/DA/1663:1665,
1/DA/1995:1997
Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_4V7M_3881/DA/1666:1669,
1/DA/1993:1994
Major groove platform; stack outside cWW
geometric
IL_5J7L_306
IL_50694.7
IL_4V7M_3891/DA/1666:1674,
1/DA/1990:1994
No text annotation
geometric
IL_8VTW_350
NA
IL_4V7M_3901/DA/1669:1674,
1/DA/1990:1993
No text annotation
homologous
IL_9DFE_067
IL_76758.2
IL_4V7M_3081/DA/1686:1691,
1/DA/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_4V7M_3091/DA/1770:1771,
1/DA/1980:1982
Single bulged A
homologous
IL_7RQB_069
NA
IL_4V7M_3101/DA/1798:1804,
1/DA/1813:1821
Kink-turn related
homologous
IL_7RQB_070
NA
IL_4V7M_3111/DA/1837:1840,
1/DA/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_7A0S_066
IL_95583.2
IL_4V7M_3121/DA/1841:1842,
1/DA/1898:1901
Major groove intercalation
homologous
IL_7A0S_067
IL_66635.5
IL_4V7M_3131/DA/1846:1849,
1/DA/1893:1894
Minor groove platform
homologous
IL_7RQB_073
NA
IL_4V7M_3141/DA/1851:1855,
1/DA/1887:1891
UAA/GAN with extra pair
homologous
IL_7RQB_074
NA
IL_4V7M_3151/DA/1856:1860,
1/DA/1882:1886
Triple sheared
homologous
IL_7RQB_075
NA
IL_4V7M_3161/DA/1933:1934,
1/DA/1964:1967
Bulged stacked bases
geometric
IL_5J7L_318
IL_22551.3
IL_4V7M_3171/DA/1934:1945,
1/DA/1961:1964
No text annotation
homologous
IL_4WF9_077
IL_42218.2
IL_4V7M_3181/DA/2050:2052,
1/DA/2617:2618
Major groove platform
homologous
IL_7RQB_078
NA
IL_4V7M_3191/DA/2054:2057,
1/DA/2611:2615
No text annotation
homologous
IL_7RQB_079
NA
IL_4V7M_3201/DA/2067:2069,
1/DA/2442:2443
Single bulged U
homologous
IL_7RQB_080
NA
IL_4V7M_3211/DA/2070:2071,
1/DA/2438:2441
Minor groove platform
homologous
IL_5J7L_324
IL_51454.2
IL_4V7M_3221/DA/2081:2083,
1/DA/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4V7M_3231/DA/2085:2087,
1/DA/2232:2234
No text annotation
homologous
IL_7RQB_083
NA
IL_4V7M_3271/DA/2108:2110,
1/DA/2179:2181
Isolated non-canonical cWW pair
geometric
IL_4PCJ_001
IL_28037.2
IL_4V7M_3281/DA/2110:2120,
1/DA/2178:2179
No text annotation
homologous
IL_3U4M_002
IL_32056.1
IL_4V7M_3291/DA/2124:2127,
1/DA/2161:2174
No text annotation
homologous
IL_3U4M_003
IL_75283.2
IL_4V7M_3301/DA/2129:2136,
1/DA/2155:2159
Kink-turn
geometric
IL_5J7L_330
IL_70923.9
IL_4V7M_3921/DA/2297:2299,
1/DA/2317:2321
No text annotation
homologous
IL_9DFE_088
IL_61476.2
IL_4V7M_3341/DA/2350:2353,
1/DA/2364:2367
Double sheared
homologous
IL_7RQB_089
NA
IL_4V7M_3351/DA/2401:2403,
1/DA/2414:2415
Major groove platform
homologous
IL_7A0S_082
IL_48076.6
IL_4V7M_3361/DA/2453:2454,
1/DA/2498:2500
Single stack bend
geometric
IL_7RQB_091
NA
IL_4V7M_3371/DA/2454:2455,
1/DA/2496:2498
Major groove platform
homologous
IL_7RQB_092
NA
IL_4V7M_3381/DA/2457:2459,
1/DA/2493:2494
Major groove platform
geometric
IL_4WF9_091
IL_48076.6
IL_4V7M_3391/DA/2459:2461,
1/DA/2489:2493
Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA
IL_4V7M_3401/DA/2466:2470,
1/DA/2480:2484
Triple sheared
homologous
IL_7RQB_095
NA
IL_4V7M_3411/DA/2507:2508,
1/DA/2580:2582
Major groove platform
homologous
IL_7RQB_096
NA
IL_4V7M_3421/DA/2510:2512,
1/DA/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_4V7M_3431/DA/2512:2513,
1/DA/2571:2574
Multiple bulged bases
homologous
IL_7RQB_098
NA
IL_4V7M_3441/DA/2522:2523,
1/DA/2540:2543
Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_4V7M_3461/DA/2591:2592,
1/DA/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA
IL_4V7M_3471/DA/2636:2640,
1/DA/2774:2782
tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_4V7M_3481/DA/2652:2658,
1/DA/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
IL_16458.4
IL_4V7M_3491/DA/2680:2684,
1/DA/2725:2727
C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_4V7M_3501/DA/2687:2691,
1/DA/2718:2722
No text annotation
homologous
IL_7RQB_105
NA
IL_4V7M_3511/DA/2695:2696,
1/DA/2711:2714
Multiple bulged bases
homologous
IL_7RQB_106
NA
IL_4V7M_3521/DA/2737:2742,
1/DA/2762:2767
UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_4V7M_3531/DA/2838:2839,
1/DA/2878:2880
Single bulged C
homologous
IL_7RQB_108
NA
IL_4V7M_3541/DA/2843:2846,
1/DA/2870:2874
No text annotation
homologous
IL_7RQB_109
NA
IL_4V7M_3551/DA/2847:2852,
1/DA/2865:2869
tHS double platform
homologous
IL_7RQB_110
NA
IL_4V7M_3931/DA/2847:2854,
1/DA/2863:2869
No text annotation
IL_4V7M_3561/DB/2:5,
1/DB/116:118
No text annotation
geometric
IL_8C3A_419
NA
IL_4V7M_3581/DB/17:18,
1/DB/65:67
Major groove intercalation
homologous
IL_7RQB_111
NA
IL_4V7M_3601/DB/23:28,
1/DB/56:60
No text annotation
homologous
IL_5J7L_356
IL_18472.4
IL_4V7M_3611/DB/30:32,
1/DB/50:54
No text annotation
homologous
IL_4WF9_114
NA
IL_4V7M_3621/DB/71:79,
1/DB/98:106
Bacterial 5S Loop E
homologous
IL_7A0S_106
IL_56455.6

Problematic loops

#loop idProblemSequence
IL_4V7M_364Tandem non-canonical cWW pairs
IL_4V7M_026No text annotation
IL_4V7M_030No text annotation
IL_4V7M_035Isolated non-canonical cWW pair
IL_4V7M_040Tandem non-canonical cWW pairs
IL_4V7M_041No text annotation
IL_4V7M_042Isolated cWS basepair
IL_4V7M_366No text annotation
IL_4V7M_052Isolated non-canonical cWW pair
IL_4V7M_065No text annotation
IL_4V7M_072No text annotation
IL_4V7M_073No text annotation
IL_4V7M_078Isolated non-canonical cWW pair
IL_4V7M_0915x5 Sarcin-Ricin with intercalated A; G-bulge
IL_4V7M_398Isolated near basepair
IL_4V7M_094Tandem non-canonical cWW pairs
IL_4V7M_105Isolated non-canonical cWW pair
IL_4V7M_370Triple sheared related
IL_4V7M_121No text annotation
IL_4V7M_123No text annotation
IL_4V7M_145Isolated non-canonical cWW pair
IL_4V7M_146Isolated non-canonical cWW pair
IL_4V7M_147No text annotation
IL_4V7M_373No text annotation
IL_4V7M_153Isolated non-canonical cWW pair
IL_4V7M_374No text annotation
IL_4V7M_164Isolated non-canonical cWW pair
IL_4V7M_169Isolated cWS basepair
IL_4V7M_178No text annotation
IL_4V7M_181Isolated non-canonical cWW pair
IL_4V7M_182No text annotation
IL_4V7M_375No text annotation
IL_4V7M_188No text annotation
IL_4V7M_208No text annotation
IL_4V7M_376Major groove platform with extra cWW
IL_4V7M_212No text annotation
IL_4V7M_378No text annotation
IL_4V7M_219No text annotation
IL_4V7M_220Minor groove platform with extra cWW
IL_4V7M_380Isolated non-canonical cWW pair
IL_4V7M_381No text annotation
IL_4V7M_382Partly complementary
IL_4V7M_383No text annotation
IL_4V7M_230Isolated non-canonical cWW pair
IL_4V7M_232Isolated non-canonical cWW pair
IL_4V7M_242No text annotation
IL_4V7M_243No text annotation
IL_4V7M_244Isolated non-canonical cWW pair
IL_4V7M_254No text annotation
IL_4V7M_384No text annotation
IL_4V7M_255No text annotation
IL_4V7M_253Major groove platform with intercalation
IL_4V7M_260Intercalated cWW
IL_4V7M_2735x5 Sarcin-Ricin with intercalated A; G-bulge
IL_4V7M_276Tandem non-canonical cWW pairs
IL_4V7M_406Isolated near basepair
IL_4V7M_280Isolated non-canonical cWW pair
IL_4V7M_288No text annotation
IL_4V7M_295No text annotation
IL_4V7M_298No text annotation
IL_4V7M_306No text annotation
IL_4V7M_307No text annotation
IL_4V7M_324Tandem non-canonical cWW pairs
IL_4V7M_325Isolated non-canonical cWW pair
IL_4V7M_326Isolated non-canonical cWW pair
IL_4V7M_391No text annotation
IL_4V7M_331Isolated non-canonical cWW pair
IL_4V7M_332Isolated cWH basepair
IL_4V7M_333No text annotation
IL_4V7M_345Isolated non-canonical cWW pair
IL_4V7M_357No text annotation
IL_4V7M_359Isolated non-canonical cWW pair
IL_4V7M_394No text annotation
IL_4V7M_395No text annotation
IL_4V7M_363Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V7M_0341/AA/46:47,
1/AA/361:367,
1/AA/393:395
No text annotation
geometric
J3_4LFB_010
J3_67856.4
J3_4V7M_0351/AA/46:52,
1/AA/359:367,
1/AA/393:395
No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_4V7M_0361/AA/586:588,
1/AA/651:654,
1/AA/754:755
No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_4V7M_0371/AA/586:588,
1/AA/651:655,
1/AA/751:755
No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_4V7M_0381/AA/672:673,
1/AA/717:725,
1/AA/732:734
No text annotation
homologous
J3_4LFB_012
J3_11934.4
J3_4V7M_0011/AA/826:829,
1/AA/857:861,
1/AA/868:874
No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_4V7M_0021/AA/936:939,
1/AA/1344:1350,
1/AA/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_4V7M_0031/AA/943:946,
1/AA/1235:1237,
1/AA/1337:1340
No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_4V7M_0681/AA/955:962,
1/AA/973:984,
1/AA/1221:1225
No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_4V7M_0051/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215
No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_4V7M_0401/AA/990:997,
1/AA/1044:1047,
1/AA/1210:1215
No text annotation
homologous
J3_4LFB_016
J3_76475.2
J3_4V7M_0061/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193
No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_4V7M_0411/AA/1073:1074,
1/AA/1083:1087,
1/AA/1098:1102
No text annotation
homologous
J3_6CZR_024
NA
J3_4V7M_0071/AA/1116:1118,
1/AA/1155:1161,
1/AA/1175:1184
No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_4V7M_0081/AA/1237:1241,
1/AA/1296:1303,
1/AA/1334:1337
No text annotation
homologous
J3_4LFB_009
J3_37047.6
J3_4V7M_0421/BA/30:31,
1/BA/474:481,
1/BA/509:510
No text annotation
geometric
J3_8VTW_036
NA
J3_4V7M_0431/BA/30:31,
1/BA/474:484,
1/BA/496:510
No text annotation
homologous
J3_4WF9_011
J3_92134.2
J3_4V7M_0441/BA/32:35,
1/BA/445:461,
1/BA/468:473
No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_4V7M_0691/BA/56:57,
1/BA/70:76,
1/BA/110:114
No text annotation
homologous
J3_9DFE_004
J3_35667.2
J3_4V7M_0451/BA/297:301,
1/BA/316:325,
1/BA/337:341
No text annotation
homologous
J3_9DFE_006
J3_46299.2
J3_4V7M_0101/BA/683:689,
1/BA/773:775,
1/BA/791:794
No text annotation
homologous
J3_7A0S_004
J3_64189.2
J3_4V7M_0111/BA/698:700,
1/BA/732:736,
1/BA/760:763
No text annotation
homologous
J3_7RQB_005
NA
J3_4V7M_0121/BA/1298:1303,
1/BA/1625:1627,
1/BA/1639:1642
No text annotation
homologous
J3_7RQB_007
NA
J3_4V7M_0131/BA/1306:1309,
1/BA/1605:1611,
1/BA/1620:1622
No text annotation
homologous
J3_7RQB_008
NA
J3_4V7M_0461/BA/1344:1350,
1/BA/1381:1385,
1/BA/1402:1403
No text annotation
homologous
J3_9DFE_012
J3_31965.2
J3_4V7M_0471/BA/1424:1429,
1/BA/1564:1565,
1/BA/1568:1574
No text annotation
homologous
J3_9DFE_013
J3_34864.2
J3_4V7M_0141/BA/2091:2093,
1/BA/2196:2200,
1/BA/2223:2228
No text annotation
homologous
J3_7RQB_010
NA
J3_4V7M_0481/BA/2282:2284,
1/BA/2384:2395,
1/BA/2421:2427
No text annotation
homologous
J3_9DFE_015
J3_20992.1
J3_4V7M_0151/BA/2295:2297,
1/BA/2321:2323,
1/BA/2332:2337
No text annotation
homologous
J3_7RQB_011
NA
J3_4V7M_0161/BA/2517:2520,
1/BA/2545:2547,
1/BA/2561:2567
No text annotation
homologous
J3_9DFE_017
J3_32601.5
J3_4V7M_0491/BA/2814:2815,
1/BA/2831:2836,
1/BA/2882:2886
No text annotation
homologous
J3_9DFE_019
J3_76911.2
J3_4V7M_0501/BB/11:16,
1/BB/68:69,
1/BB/108:110
No text annotation
homologous
J3_9DFE_020
J3_12003.2
J3_4V7M_0511/CA/46:47,
1/CA/361:367,
1/CA/393:395
No text annotation
geometric
J3_4LFB_010
J3_67856.4
J3_4V7M_0521/CA/46:52,
1/CA/359:367,
1/CA/393:395
No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_4V7M_0531/CA/586:588,
1/CA/651:654,
1/CA/754:755
No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_4V7M_0541/CA/586:588,
1/CA/651:655,
1/CA/751:755
No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_4V7M_0551/CA/672:673,
1/CA/717:725,
1/CA/732:734
No text annotation
homologous
J3_4LFB_012
J3_11934.4
J3_4V7M_0171/CA/826:829,
1/CA/857:861,
1/CA/868:874
No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_4V7M_0181/CA/936:939,
1/CA/1344:1350,
1/CA/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_4V7M_0191/CA/943:946,
1/CA/1235:1237,
1/CA/1337:1340
No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_4V7M_0701/CA/955:962,
1/CA/973:984,
1/CA/1221:1225
No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_4V7M_0211/CA/990:993,
1/CA/1045:1047,
1/CA/1210:1215
No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_4V7M_0571/CA/990:1007,
1/CA/1022:1047,
1/CA/1210:1215
No text annotation
J3_4V7M_0221/CA/1063:1068,
1/CA/1107:1113,
1/CA/1187:1193
No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_4V7M_0711/CA/1073:1074,
1/CA/1083:1087,
1/CA/1098:1102
No text annotation
homologous
J3_6CZR_024
NA
J3_4V7M_0231/CA/1116:1118,
1/CA/1155:1161,
1/CA/1175:1184
No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_4V7M_0241/CA/1237:1241,
1/CA/1296:1303,
1/CA/1334:1337
No text annotation
homologous
J3_4LFB_009
J3_37047.6
J3_4V7M_0721/CY/7:26,
1/CY/42:48,
1/CY/64:65
No text annotation
J3_4V7M_0601/DA/30:31,
1/DA/474:481,
1/DA/509:510
No text annotation
geometric
J3_4WF9_010
J3_60031.2
J3_4V7M_0611/DA/30:31,
1/DA/474:484,
1/DA/496:510
No text annotation
homologous
J3_4WF9_011
J3_92134.2
J3_4V7M_0621/DA/32:35,
1/DA/445:461,
1/DA/468:473
No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_4V7M_0731/DA/56:57,
1/DA/70:76,
1/DA/110:114
No text annotation
homologous
J3_9DFE_004
J3_35667.2
J3_4V7M_0631/DA/297:301,
1/DA/316:325,
1/DA/337:341
No text annotation
homologous
J3_9DFE_006
J3_46299.2
J3_4V7M_0261/DA/683:689,
1/DA/773:775,
1/DA/791:794
No text annotation
homologous
J3_7A0S_004
J3_64189.2
J3_4V7M_0271/DA/698:700,
1/DA/732:736,
1/DA/760:763
No text annotation
homologous
J3_7RQB_005
NA
J3_4V7M_0281/DA/1298:1303,
1/DA/1625:1627,
1/DA/1639:1642
No text annotation
homologous
J3_4WF9_004
J3_32852.6
J3_4V7M_0291/DA/1306:1309,
1/DA/1605:1611,
1/DA/1620:1622
No text annotation
homologous
J3_7RQB_008
NA
J3_4V7M_0641/DA/1344:1350,
1/DA/1381:1385,
1/DA/1402:1403
No text annotation
homologous
J3_9DFE_012
J3_31965.2
J3_4V7M_0651/DA/1424:1429,
1/DA/1564:1565,
1/DA/1568:1574
No text annotation
homologous
J3_9DFE_013
J3_34864.2
J3_4V7M_0301/DA/2091:2093,
1/DA/2196:2200,
1/DA/2223:2228
No text annotation
homologous
J3_7RQB_010
NA
J3_4V7M_0661/DA/2282:2284,
1/DA/2384:2395,
1/DA/2421:2427
No text annotation
homologous
J3_9DFE_015
J3_20992.1
J3_4V7M_0311/DA/2295:2297,
1/DA/2321:2323,
1/DA/2332:2337
No text annotation
homologous
J3_7RQB_011
NA
J3_4V7M_0321/DA/2517:2520,
1/DA/2545:2547,
1/DA/2561:2567
No text annotation
homologous
J3_9DFE_017
J3_32601.5
J3_4V7M_0671/DA/2814:2815,
1/DA/2831:2836,
1/DA/2882:2886
No text annotation
homologous
J3_9DFE_019
J3_76911.2
J3_4V7M_0331/DB/11:17,
1/DB/67:70,
1/DB/107:110
No text annotation
J4_4V7M_0011/AA/115:122,
1/AA/239:240,
1/AA/286:289,
1/AA/311:312
No text annotation
homologous
J4_4LFB_001
J4_35578.3
J4_4V7M_0021/AA/142:144,
1/AA/178:183,
1/AA/194:198,
1/AA/219:221
No text annotation
homologous
J4_4LFB_002
J4_88771.1
J4_4V7M_0031/AA/575:577,
1/AA/764:769,
1/AA/810:821,
1/AA/879:880
No text annotation
homologous
J4_4LFB_003
J4_61885.6
J4_4V7M_0321/AW/7:10,
1/AW/24:26,
1/AW/42:48,
1/AW/64:65
tRNA junction
homologous
J4_1QTQ_001
J4_36296.3
J4_4V7M_0051/AX/7:10,
1/AX/25:27,
1/AX/43:49,
1/AX/65:66
No text annotation
homologous
J4_8VU0_001
J4_70449.27
J4_4V7M_0331/AY/6:12,
1/AY/22:26,
1/AY/42:48,
1/AY/64:66
No text annotation
J4_57327.1
J4_4V7M_0071/BA/268:269,
1/BA/370:375,
1/BA/399:406,
1/BA/421:424
No text annotation
homologous
J4_9DFE_001
J4_45801.6
J4_4V7M_0081/BA/297:301,
1/BA/316:319,
1/BA/323:325,
1/BA/337:341
No text annotation
homologous
J4_9DFE_002
J4_71729.5
J4_4V7M_0091/BA/1270:1276,
1/BA/1294:1295,
1/BA/1645:1648,
1/BA/2009:2010
No text annotation
homologous
J4_9DFE_003
J4_64571.5
J4_4V7M_0101/BA/1310:1314,
1/BA/1338:1343,
1/BA/1404:1405,
1/BA/1597:1604
No text annotation
homologous
J4_9DFE_004
J4_69051.6
J4_4V7M_0111/BA/1313:1314,
1/BA/1338:1343,
1/BA/1404:1405,
1/BA/1597:1603
No text annotation
homologous
J4_9DFE_005
J4_10313.5
J4_4V7M_0121/BA/1444:1445,
1/BA/1466:1467,
1/BA/1525:1526,
1/BA/1546:1547
No text annotation
homologous
J4_9DFE_006
J4_24280.2
J4_4V7M_0131/BA/1772:1776,
1/BA/1788:1792,
1/BA/1827:1830,
1/BA/1975:1979
No text annotation
homologous
J4_9DFE_007
J4_61477.5
J4_4V7M_0141/BA/1833:1835,
1/BA/1905:1906,
1/BA/1924:1933,
1/BA/1967:1972
No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_4V7M_0341/BA/2285:2289,
1/BA/2343:2347,
1/BA/2370:2372,
1/BA/2381:2383
No text annotation
homologous
J4_4WF9_008
J4_04930.6
J4_4V7M_0161/BA/2643:2646,
1/BA/2674:2676,
1/BA/2731:2735,
1/BA/2769:2771
No text annotation
homologous
J4_9DFE_010
J4_77044.4
J4_4V7M_0171/CA/115:122,
1/CA/239:240,
1/CA/286:289,
1/CA/311:312
No text annotation
homologous
J4_4LFB_001
J4_35578.3
J4_4V7M_0181/CA/142:144,
1/CA/178:183,
1/CA/194:198,
1/CA/219:221
No text annotation
homologous
J4_4LFB_002
J4_88771.1
J4_4V7M_0191/CA/575:577,
1/CA/764:769,
1/CA/810:821,
1/CA/879:880
No text annotation
homologous
J4_4LFB_003
J4_61885.6
J4_4V7M_0351/CW/7:10,
1/CW/24:26,
1/CW/42:48,
1/CW/64:65
tRNA junction
homologous
J4_1QTQ_001
J4_36296.3
J4_4V7M_0361/CX/7:10,
1/CX/25:27,
1/CX/43:49,
1/CX/65:66
tRNA junction
homologous
J4_5AXM_001
J4_70449.27
J4_4V7M_0221/DA/268:269,
1/DA/370:375,
1/DA/399:406,
1/DA/421:424
No text annotation
homologous
J4_9DFE_001
J4_45801.6
J4_4V7M_0231/DA/297:301,
1/DA/316:319,
1/DA/323:325,
1/DA/337:341
No text annotation
homologous
J4_9DFE_002
J4_71729.5
J4_4V7M_0241/DA/1270:1276,
1/DA/1294:1295,
1/DA/1645:1648,
1/DA/2009:2010
No text annotation
homologous
J4_9DFE_003
J4_64571.5
J4_4V7M_0251/DA/1310:1314,
1/DA/1338:1343,
1/DA/1404:1405,
1/DA/1597:1604
No text annotation
homologous
J4_9DFE_004
J4_69051.6
J4_4V7M_0261/DA/1313:1314,
1/DA/1338:1343,
1/DA/1404:1405,
1/DA/1597:1603
No text annotation
homologous
J4_9DFE_005
J4_10313.5
J4_4V7M_0271/DA/1444:1445,
1/DA/1466:1467,
1/DA/1525:1526,
1/DA/1546:1547
No text annotation
homologous
J4_9DFE_006
J4_24280.2
J4_4V7M_0281/DA/1772:1776,
1/DA/1788:1792,
1/DA/1827:1830,
1/DA/1975:1979
No text annotation
homologous
J4_9DFE_007
J4_61477.5
J4_4V7M_0291/DA/1833:1835,
1/DA/1905:1906,
1/DA/1924:1933,
1/DA/1967:1972
No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_4V7M_0301/DA/2285:2289,
1/DA/2343:2347,
1/DA/2370:2372,
1/DA/2381:2383
No text annotation
homologous
J4_4WF9_008
J4_04930.6
J4_4V7M_0311/DA/2643:2646,
1/DA/2674:2676,
1/DA/2731:2735,
1/DA/2769:2771
No text annotation
homologous
J4_9DFE_010
J4_77044.4
J5_4V7M_0011/AA/36:39,
1/AA/403:406,
1/AA/436:442,
1/AA/492:500,
1/AA/545:548
No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_4V7M_0021/AA/58:61,
1/AA/106:113,
1/AA/314:316,
1/AA/337:339,
1/AA/350:354
No text annotation
homologous
J5_4LFB_002
J5_59910.6
J5_4V7M_0031/BA/47:54,
1/BA/116:121,
1/BA/130:131,
1/BA/148:150,
1/BA/176:178
No text annotation
homologous
J5_9DFE_001
J5_01737.2
J5_4V7M_0041/BA/531:533,
1/BA/560:564,
1/BA/577:579,
1/BA/1261:1262,
1/BA/2017:2018
No text annotation
homologous
J5_9DFE_003
J5_43153.5
J5_4V7M_0051/BA/584:589,
1/BA/668:671,
1/BA/809:812,
1/BA/1195:1196,
1/BA/1250:1256
No text annotation
homologous
J5_9DFE_004
J5_74302.5
J5_4V7M_0061/BA/1674:1682,
1/BA/1706:1707,
1/BA/1751:1752,
1/BA/1756:1764,
1/BA/1988:1990
No text annotation
homologous
J5_9DFE_005
J5_62523.6
J5_4V7M_0071/BA/2057:2064,
1/BA/2446:2453,
1/BA/2500:2507,
1/BA/2582:2588,
1/BA/2606:2611
No text annotation
J5_4V7M_0081/BA/2074:2077,
1/BA/2243:2246,
1/BA/2258:2259,
1/BA/2281:2282,
1/BA/2427:2435
No text annotation
homologous
J5_9DFE_007
J5_39529.1
J5_4V7M_0091/CA/36:39,
1/CA/403:406,
1/CA/436:442,
1/CA/492:500,
1/CA/545:548
No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_4V7M_0101/CA/58:61,
1/CA/106:113,
1/CA/314:316,
1/CA/337:339,
1/CA/350:354
No text annotation
homologous
J5_4LFB_002
J5_59910.6
J5_4V7M_0111/DA/47:54,
1/DA/116:121,
1/DA/130:131,
1/DA/148:150,
1/DA/176:178
No text annotation
homologous
J5_9DFE_001
J5_01737.2
J5_4V7M_0121/DA/531:533,
1/DA/560:564,
1/DA/577:579,
1/DA/1261:1262,
1/DA/2017:2018
No text annotation
homologous
J5_9DFE_003
J5_43153.5
J5_4V7M_0131/DA/584:589,
1/DA/668:671,
1/DA/809:812,
1/DA/1195:1196,
1/DA/1250:1256
No text annotation
homologous
J5_9DFE_004
J5_74302.5
J5_4V7M_0141/DA/1674:1682,
1/DA/1706:1707,
1/DA/1751:1752,
1/DA/1756:1764,
1/DA/1988:1990
No text annotation
homologous
J5_7A0S_005
J5_62523.6
J5_4V7M_0151/DA/2057:2064,
1/DA/2446:2453,
1/DA/2500:2507,
1/DA/2582:2588,
1/DA/2606:2611
No text annotation
J5_4V7M_0161/DA/2074:2077,
1/DA/2243:2246,
1/DA/2258:2259,
1/DA/2281:2282,
1/DA/2427:2435
No text annotation
homologous
J5_9DFE_007
J5_39529.1
J6_4V7M_0011/BA/44:45,
1/BA/179:183,
1/BA/214:224,
1/BA/231:235,
1/BA/262:266,
1/BA/426:433
No text annotation
J6_4V7M_0021/BA/2074:2077,
1/BA/2243:2246,
1/BA/2258:2259,
1/BA/2281:2284,
1/BA/2384:2395,
1/BA/2421:2435
No text annotation
J6_4V7M_0031/DA/44:45,
1/DA/179:183,
1/DA/214:224,
1/DA/231:235,
1/DA/262:266,
1/DA/426:433
No text annotation
J6_4V7M_0041/DA/2074:2077,
1/DA/2243:2246,
1/DA/2258:2259,
1/DA/2281:2284,
1/DA/2384:2395,
1/DA/2421:2435
No text annotation
J7_4V7M_0011/BA/817:822,
1/BA/835:836,
1/BA/943:946,
1/BA/971:976,
1/BA/987:991,
1/BA/1163:1164,
1/BA/1185:1190
No text annotation
J7_4V7M_0021/DA/817:822,
1/DA/835:836,
1/DA/943:946,
1/DA/971:976,
1/DA/987:991,
1/DA/1163:1164,
1/DA/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_4V7M_039No text annotation
J3_4V7M_004No text annotation
J3_4V7M_009No text annotation
J3_4V7M_056No text annotation
J3_4V7M_020No text annotation
J3_4V7M_058No text annotation
J3_4V7M_059No text annotation
J3_4V7M_025No text annotation
J4_4V7M_004No text annotation
J4_4V7M_006No text annotation
J4_4V7M_015No text annotation
J4_4V7M_020No text annotation
J4_4V7M_021No text annotation

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