HL_4V7M_144

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7M_144 not in the Motif Atlas

Homologous match to HL_1QTQ_003

Geometric discrepancy: 0.1669

The information below is about HL_1QTQ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

4V7M|1|CW|G|52
4V7M|1|CW|U|53
4V7M|1|CW|U|54
4V7M|1|CW|C|55
4V7M|1|CW|G|56
4V7M|1|CW|A|57
4V7M|1|CW|A|58
4V7M|1|CW|U|59
4V7M|1|CW|C|60

Current chains

Chain CW

tRNA-Gln

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25