HL_4V7P_006

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

4V7P|1|AA|U|208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_006 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2637

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V7P|1|AA|C|201
4V7P|1|AA|U|208
4V7P|1|AA|U|209
4V7P|1|AA|U|210
4V7P|1|AA|G|216

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains