3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
GCUCAUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7P_035 not in the Motif Atlas
Homologous match to HL_6CFJ_107
Geometric discrepancy: 0.0984
The information below is about HL_6CFJ_107
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.7
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
51

Unit IDs

4V7P|1|AW|G|31
4V7P|1|AW|C|32
4V7P|1|AW|U|33
4V7P|1|AW|C|34
4V7P|1|AW|A|35
4V7P|1|AW|U|36
4V7P|1|AW|A|37
4V7P|1|AW|A|38
4V7P|1|AW|C|39

Current chains

Chain AW
P-site tRNA-fMet

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AI
30S ribosomal protein S9
Chain AV
Peptide chain release factor 1
Chain AX
messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')

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