HL_4V7P_035

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_035 not in the Motif Atlas

Homologous match to HL_6CFJ_107

Geometric discrepancy: 0.0984

The information below is about HL_6CFJ_107

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

4V7P|1|AW|G|31
4V7P|1|AW|C|32
4V7P|1|AW|U|33
4V7P|1|AW|C|34
4V7P|1|AW|A|35
4V7P|1|AW|U|36
4V7P|1|AW|A|37
4V7P|1|AW|A|38
4V7P|1|AW|C|39

Current chains

Chain AW

P-site tRNA-fMet

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AI

30S ribosomal protein S9

Chain AV

Peptide chain release factor 1

Chain AX

messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')