HL_4V7P_039

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

4V7P|1|BA|G|125, 4V7P|1|BA|A|126, 4V7P|1|BA|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_039 not in the Motif Atlas

Homologous match to HL_5J7L_136

Geometric discrepancy: 0.1066

The information below is about HL_5J7L_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7P|1|BA|G|123
4V7P|1|BA|G|124
4V7P|1|BA|G|125
4V7P|1|BA|A|126
4V7P|1|BA|A|127
4V7P|1|BA|C|128

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23