HL_4V7P_121

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGUUCGUGGAGCC

Length

13 nucleotides

Bulged bases

4V7P|1|CA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_121 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.3468

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V7P|1|CA|G|381
4V7P|1|CA|G|382
4V7P|1|CA|U|383
4V7P|1|CA|U|384
4V7P|1|CA|C|385
4V7P|1|CA|G|386
4V7P|1|CA|U|387
4V7P|1|CA|G|388
4V7P|1|CA|G|389
4V7P|1|CA|A|390
4V7P|1|CA|G|391
4V7P|1|CA|C|392
4V7P|1|CA|C|393

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CL

50S ribosomal protein L15

Chain CX

50S ribosomal protein L28