HL_4V7P_127

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGUUGAG

Length

7 nucleotides

Bulged bases

4V7P|1|CA|G|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_127 not in the Motif Atlas

Homologous match to HL_7RQB_019

Geometric discrepancy: 0.1988

The information below is about HL_7RQB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32369.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

6

Unit IDs

4V7P|1|CA|C|611
4V7P|1|CA|G|612
4V7P|1|CA|U|613
4V7P|1|CA|U|614
4V7P|1|CA|G|615
4V7P|1|CA|A|616
4V7P|1|CA|G|617

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L4