Motif HL_32369.1 Version HL_32369.1 of this group appears in releases 3.77 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7RQB_019 | 7RQB | 0.2936 | 2 | 1A | LSU rRNA | C | 612 | G | 613 | U | 614 | A | 614|||C | G | 615 | cWW | ||
| 2 | HL_7A0S_019 | 7A0S | 0.0000 | 1 | X | LSU rRNA | U | 622 | G | 623 | A | 624 | A | 626 | A | 627 | cWW | ntsS | |
| 3 | HL_4U7U_001 | 4U7U | 0.3946 | 1 | UNCG | L | crRNA | C | 51 | G | 52 | C | 54 | A | 55 | G | 56 | cWW | tSW |
| 4 | HL_3DH3_001 | 3DH3 | 0.4810 | 1 | UNCG | E | stem loop fragment of E. Coli 23S RNA | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
| 5 | HL_3DH3_003 | 3DH3 | 0.5557 | 1 | UNCG | F | stem loop fragment of E. Coli 23S RNA | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
| 6 | HL_7LYF_002 | 7LYF | 0.7577 | 2 | UNCG variation | A | Dengue virus SLA | A | 59 | C | 60 | G | 62 | A | 63 | U | 65 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGAG | 2 |
| CGUUGAG | 1 |
| UGAAAA | 1 |
| CGCCAG | 1 |
| ACAGAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGA | 2 |
| GUUGA | 1 |
| GAAA | 1 |
| GCCA | 1 |
| CAGAU | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UNCG (3)
- (2)
- UNCG variation (1)
- Basepair signature
- cWW-tSW-F
- Heat map statistics
- Min 0.16 | Avg 0.37 | Max 0.76
Coloring options: