HL_4V7P_149

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V7P|1|CA|A|1614, 4V7P|1|CA|A|1616, 4V7P|1|CA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_149 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1449

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V7P|1|CA|C|1612
4V7P|1|CA|G|1613
4V7P|1|CA|A|1614
4V7P|1|CA|C|1615
4V7P|1|CA|A|1616
4V7P|1|CA|C|1617
4V7P|1|CA|A|1618
4V7P|1|CA|G|1619

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C4

50S ribosomal protein L34

Chain CS

50S ribosomal protein L22