HL_4V7P_166

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_166 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1335

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7P|1|CA|C|2355
4V7P|1|CA|C|2356
4V7P|1|CA|U|2357
4V7P|1|CA|G|2358
4V7P|1|CA|C|2359
4V7P|1|CA|A|2360
4V7P|1|CA|A|2361
4V7P|1|CA|G|2362

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L35

Chain CL

50S ribosomal protein L15

Chain CW

50S ribosomal protein L27