HL_4V7R_005

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V7R|1|A1|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_005 not in the Motif Atlas

Geometric match to HL_1I6U_001

Geometric discrepancy: 0.1465

The information below is about HL_1I6U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V7R|1|A1|C|230
4V7R|1|A1|U|231
4V7R|1|A1|U|232
4V7R|1|A1|C|233
4V7R|1|A1|G|234
4V7R|1|A1|G|235

Current chains

Chain A1

18S ribosomal RNA

Nearby chains