HL_4V7R_010

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

4V7R|1|A1|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_010 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2971

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V7R|1|A1|C|414
4V7R|1|A1|C|415
4V7R|1|A1|A|416
4V7R|1|A1|A|417
4V7R|1|A1|G|418
4V7R|1|A1|G|419

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain BU

60S ribosomal protein L23