HL_4V7R_016

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UCCUUGUGG

Length

9 nucleotides

Bulged bases

4V7R|1|A1|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_016 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.35

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V7R|1|A1|U|715
4V7R|1|A1|C|716
4V7R|1|A1|C|717
4V7R|1|A1|U|718
4V7R|1|A1|U|719
4V7R|1|A1|G|720
4V7R|1|A1|U|721
4V7R|1|A1|G|722
4V7R|1|A1|G|723

Current chains

Chain A1

18S ribosomal RNA

Nearby chains