HL_4V7R_018

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

4V7R|1|A1|A|780, 4V7R|1|A1|U|781, 4V7R|1|A1|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_018 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.389

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V7R|1|A1|C|777
4V7R|1|A1|G|778
4V7R|1|A1|U|779
4V7R|1|A1|A|780
4V7R|1|A1|U|781
4V7R|1|A1|U|782
4V7R|1|A1|G|783

Current chains

Chain A1

18S ribosomal RNA

Nearby chains