HL_4V7R_030

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GCAUUUGC

Length

8 nucleotides

Bulged bases

4V7R|1|A1|U|1361, 4V7R|1|A1|U|1362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_030 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.3704

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

4V7R|1|A1|G|1358
4V7R|1|A1|C|1359
4V7R|1|A1|A|1360
4V7R|1|A1|U|1361
4V7R|1|A1|U|1362
4V7R|1|A1|U|1363
4V7R|1|A1|G|1364
4V7R|1|A1|C|1365

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S16

Chain AM

40S ribosomal protein S19-A