HL_4V7R_033

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_033 not in the Motif Atlas

Homologous match to HL_8P9A_222

Geometric discrepancy: 0.5269

The information below is about HL_8P9A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

4V7R|1|A1|A|1550
4V7R|1|A1|U|1551
4V7R|1|A1|U|1552
4V7R|1|A1|G|1553
4V7R|1|A1|U|1554
4V7R|1|A1|A|1555
4V7R|1|A1|A|1556
4V7R|1|A1|U|1557
4V7R|1|A1|U|1558
4V7R|1|A1|A|1559
4V7R|1|A1|U|1560
4V7R|1|A1|U|1561

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S15

Chain AL

40S ribosomal protein S18

Chain AS

40S ribosomal protein S29-A