3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
GUCAUCAGC
Length
9 nucleotides
Bulged bases
4V7R|1|A1|G|1601
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7R_034 not in the Motif Atlas
Homologous match to HL_4V88_220
Geometric discrepancy: 0.3448
The information below is about HL_4V88_220
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01927.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V7R|1|A1|G|1594
4V7R|1|A1|U|1595
4V7R|1|A1|C|1596
4V7R|1|A1|A|1597
4V7R|1|A1|U|1598
4V7R|1|A1|C|1599
4V7R|1|A1|A|1600
4V7R|1|A1|G|1601
4V7R|1|A1|C|1602

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain AN
40S ribosomal protein S20
Chain AS
40S ribosomal protein S29-A

Coloring options:


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