HL_4V7R_051

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGUAAAA

Length

7 nucleotides

Bulged bases

4V7R|1|B1|U|689, 4V7R|1|B1|A|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_051 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.2616

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V7R|1|B1|U|687
4V7R|1|B1|G|688
4V7R|1|B1|U|689
4V7R|1|B1|A|690
4V7R|1|B1|A|691
4V7R|1|B1|A|692
4V7R|1|B1|A|693

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain BD

60S ribosomal protein L4-A

Chain Bq

Unassigned secondary structure