HL_4V7R_061

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

4V7R|1|B1|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_061 not in the Motif Atlas

Homologous match to HL_5TBW_025

Geometric discrepancy: 0.1497

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7R|1|B1|G|1126
4V7R|1|B1|G|1127
4V7R|1|B1|U|1128
4V7R|1|B1|A|1129
4V7R|1|B1|A|1130
4V7R|1|B1|G|1131
4V7R|1|B1|C|1132

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BJ

60S ribosomal protein L10