HL_4V7R_063

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

4V7R|1|B1|U|1241, 4V7R|1|B1|G|1242, 4V7R|1|B1|G|1243, 4V7R|1|B1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_063 not in the Motif Atlas

Geometric match to HL_1GID_008

Geometric discrepancy: 0.3686

The information below is about HL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50621.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V7R|1|B1|C|1239
4V7R|1|B1|A|1240
4V7R|1|B1|U|1241
4V7R|1|B1|G|1242
4V7R|1|B1|G|1243
4V7R|1|B1|A|1244
4V7R|1|B1|A|1245
4V7R|1|B1|G|1246
4V7R|1|B1|U|1247
4V7R|1|B1|C|1248
4V7R|1|B1|G|1249

Current chains

Chain B1

25S ribosomal RNA

Nearby chains