HL_4V7R_094

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_094 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1531

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

4V7R|1|B1|C|2693
4V7R|1|B1|A|2694
4V7R|1|B1|A|2695
4V7R|1|B1|A|2696
4V7R|1|B1|A|2697
4V7R|1|B1|G|2698
4V7R|1|B1|G|2699
4V7R|1|B1|G|2700

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BT

60S ribosomal protein L21-A