HL_4V7R_107

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

4V7R|1|B1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_107 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.2822

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

4V7R|1|B1|G|3303
4V7R|1|B1|U|3304
4V7R|1|B1|A|3305
4V7R|1|B1|U|3306
4V7R|1|B1|A|3307
4V7R|1|B1|C|3308
4V7R|1|B1|G|3309
4V7R|1|B1|A|3310
4V7R|1|B1|C|3311

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BC

60S ribosomal protein L3

Chain BQ

60S ribosomal protein L17-A