HL_4V7R_129

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUUGGCCGGUCCGAUUUUUUUUUCCAAC

Length

28 nucleotides

Bulged bases

4V7R|1|C1|G|656, 4V7R|1|C1|C|658, 4V7R|1|C1|C|659, 4V7R|1|C1|A|661, 4V7R|1|C1|U|664, 4V7R|1|C1|U|667, 4V7R|1|C1|U|681

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|C1|G|648
4V7R|1|C1|U|649
4V7R|1|C1|U|650
4V7R|1|C1|G|651
4V7R|1|C1|G|652
4V7R|1|C1|C|653
4V7R|1|C1|C|654
4V7R|1|C1|G|655
4V7R|1|C1|G|656
4V7R|1|C1|U|657
4V7R|1|C1|C|658
4V7R|1|C1|C|659
4V7R|1|C1|G|660
4V7R|1|C1|A|661
4V7R|1|C1|U|662
4V7R|1|C1|U|663
4V7R|1|C1|U|664
4V7R|1|C1|U|665
4V7R|1|C1|U|666
4V7R|1|C1|U|667
4V7R|1|C1|U|679
4V7R|1|C1|U|680
4V7R|1|C1|U|681
4V7R|1|C1|C|682
4V7R|1|C1|C|683
4V7R|1|C1|A|684
4V7R|1|C1|A|685
4V7R|1|C1|C|686

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CO

40S ribosomal protein S22-A