HL_4V7R_133

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_133 not in the Motif Atlas

Homologous match to HL_8P9A_208

Geometric discrepancy: 0.3463

The information below is about HL_8P9A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|C1|C|827
4V7R|1|C1|U|828
4V7R|1|C1|A|829
4V7R|1|C1|U|830
4V7R|1|C1|U|831
4V7R|1|C1|U|832
4V7R|1|C1|U|833
4V7R|1|C1|G|834
4V7R|1|C1|U|835
4V7R|1|C1|U|836
4V7R|1|C1|G|837
4V7R|1|C1|G|838
4V7R|1|C1|U|839
4V7R|1|C1|U|840
4V7R|1|C1|U|841
4V7R|1|C1|C|842
4V7R|1|C1|U|843
4V7R|1|C1|A|844
4V7R|1|C1|G|845

Current chains

Chain C1

18S ribosomal RNA

Nearby chains