3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
GUUUCAAGC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7R_145 not in the Motif Atlas
Geometric match to HL_3RG5_006
Geometric discrepancy: 0.2494
The information below is about HL_3RG5_006
Detailed Annotation
tRNA anticodon loop
Broad Annotation
tRNA anticodon loop
Motif group
HL_04259.3
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

4V7R|1|C1|G|1395
4V7R|1|C1|U|1396
4V7R|1|C1|U|1397
4V7R|1|C1|U|1398
4V7R|1|C1|C|1399
4V7R|1|C1|A|1400
4V7R|1|C1|A|1401
4V7R|1|C1|G|1402
4V7R|1|C1|C|1403

Current chains

Chain C1
18S ribosomal RNA

Nearby chains

Chain CT
Guanine nucleotide-binding protein subunit beta-like protein; RACK-1
Chain Ca
Unassigned secondary structure

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