HL_4V7R_151

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

4V7R|1|D1|A|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_151 not in the Motif Atlas

Homologous match to HL_8C3A_001

Geometric discrepancy: 0.3818

The information below is about HL_8C3A_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V7R|1|D1|U|38
4V7R|1|D1|A|39
4V7R|1|D1|A|40
4V7R|1|D1|G|41
4V7R|1|D1|C|42
4V7R|1|D1|A|43
4V7R|1|D1|U|44
4V7R|1|D1|A|45

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DO

60S ribosomal protein L15-A

Chain DY

60S ribosomal protein L28

Chain Df

60S ribosomal protein L42