HL_4V7R_155

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

4V7R|1|D1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_155 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.1495

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4V7R|1|D1|U|194
4V7R|1|D1|U|195
4V7R|1|D1|G|196
4V7R|1|D1|G|197
4V7R|1|D1|A|198
4V7R|1|D1|A|199
4V7R|1|D1|C|200
4V7R|1|D1|A|201

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DX

60S ribosomal protein L26-A