HL_4V7R_159

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGUAAAUUCC

Length

10 nucleotides

Bulged bases

4V7R|1|D1|G|304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_159 not in the Motif Atlas

Homologous match to HL_5TBW_009

Geometric discrepancy: 0.2801

The information below is about HL_5TBW_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V7R|1|D1|G|303
4V7R|1|D1|G|304
4V7R|1|D1|U|305
4V7R|1|D1|A|306
4V7R|1|D1|A|307
4V7R|1|D1|A|308
4V7R|1|D1|U|309
4V7R|1|D1|U|310
4V7R|1|D1|C|311
4V7R|1|D1|C|312

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DO

60S ribosomal protein L15-A

Chain DY

60S ribosomal protein L28