HL_4V7R_160

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_160 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.1332

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7R|1|D1|A|357
4V7R|1|D1|G|358
4V7R|1|D1|U|359
4V7R|1|D1|G|360
4V7R|1|D1|A|361
4V7R|1|D1|U|362

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DD

60S ribosomal protein L4-A

Chain Dd

60S ribosomal protein L37-A

Chain De

60S ribosomal protein L39