HL_4V7R_185

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

4V7R|1|D1|U|1606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_185 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.2503

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7R|1|D1|G|1599
4V7R|1|D1|U|1600
4V7R|1|D1|U|1601
4V7R|1|D1|A|1602
4V7R|1|D1|A|1603
4V7R|1|D1|G|1604
4V7R|1|D1|A|1605
4V7R|1|D1|U|1606
4V7R|1|D1|U|1607
4V7R|1|D1|C|1608

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DS

60S ribosomal protein L19

Chain DW

60S ribosomal protein L25