HL_4V7R_198

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_198 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.2141

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7R|1|D1|A|2220
4V7R|1|D1|G|2221
4V7R|1|D1|A|2222
4V7R|1|D1|A|2223
4V7R|1|D1|A|2224
4V7R|1|D1|U|2225

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain Df

60S ribosomal protein L42