HL_4V7R_199

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

4V7R|1|D1|A|2256, 4V7R|1|D1|A|2262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_199 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2614

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4V7R|1|D1|G|2253
4V7R|1|D1|U|2254
4V7R|1|D1|A|2255
4V7R|1|D1|A|2256
4V7R|1|D1|C|2257
4V7R|1|D1|U|2258
4V7R|1|D1|A|2259
4V7R|1|D1|U|2260
4V7R|1|D1|G|2261
4V7R|1|D1|A|2262
4V7R|1|D1|C|2263

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain C1

Small subunit ribosomal RNA; SSU rRNA