HL_4V7R_227

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

ACAUU

Length

5 nucleotides

Bulged bases

4V7R|1|D3|A|111, 4V7R|1|D3|U|112

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_227 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3433

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

4V7R|1|D3|A|109
4V7R|1|D3|C|110
4V7R|1|D3|A|111
4V7R|1|D3|U|112
4V7R|1|D3|U|113

Current chains

Chain D3

5.8S ribosomal RNA

Nearby chains

Chain D1

Large subunit ribosomal RNA; LSU rRNA

Chain DW

60S ribosomal protein L25

Chain Dd

60S ribosomal protein L37-A

Chain De

60S ribosomal protein L39