3D structure

PDB id
4V7S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to telithromycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
4V7S|1|DA|A|2268, 4V7S|1|DA|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7S_189 not in the Motif Atlas
Homologous match to HL_5J7L_187
Geometric discrepancy: 0.1909
The information below is about HL_5J7L_187
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91939.2
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
8

Unit IDs

4V7S|1|DA|C|2264
4V7S|1|DA|U|2265
4V7S|1|DA|A|2266
4V7S|1|DA|A|2267
4V7S|1|DA|A|2268
4V7S|1|DA|G|2269
4V7S|1|DA|A|2270
4V7S|1|DA|G|2271
4V7S|1|DA|U|2272
4V7S|1|DA|A|2273
4V7S|1|DA|A|2274
4V7S|1|DA|C|2275
4V7S|1|DA|G|2276

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DM
50S ribosomal protein L16
Chain DW
50S ribosomal protein L27

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1096 s