HL_4V7U_207

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGUAACGGCU

Length

11 nucleotides

Bulged bases

4V7U|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7U_207 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3922

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

4V7U|1|AA|G|258
4V7U|1|AA|G|259
4V7U|1|AA|G|260
4V7U|1|AA|U|261
4V7U|1|AA|A|262
4V7U|1|AA|A|263
4V7U|1|AA|C|264
4V7U|1|AA|G|265
4V7U|1|AA|G|266
4V7U|1|AA|C|267
4V7U|1|AA|U|268

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20