HL_4V7V_111

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7V_111 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0995

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V7V|1|CA|A|320
4V7V|1|CA|A|321
4V7V|1|CA|C|322
4V7V|1|CA|U|323
4V7V|1|CA|G|324
4V7V|1|CA|A|325
4V7V|1|CA|G|326
4V7V|1|CA|A|327
4V7V|1|CA|C|328
4V7V|1|CA|A|329
4V7V|1|CA|C|330
4V7V|1|CA|G|331
4V7V|1|CA|G|332
4V7V|1|CA|U|333

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20