HL_4V7V_134

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7V_134 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3298

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4V7V|1|CA|C|1448
4V7V|1|CA|C|1449
4V7V|1|CA|U|1450
4V7V|1|CA|U|1451
4V7V|1|CA|C|1452
4V7V|1|CA|G|1453
4V7V|1|CA|G|1454
4V7V|1|CA|G|1455

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20