HL_4V7V_184

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V7V|1|DA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7V_184 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1095

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V7V|1|DA|G|1949
4V7V|1|DA|G|1950
4V7V|1|DA|U|1951
4V7V|1|DA|A|1952
4V7V|1|DA|A|1953
4V7V|1|DA|G|1954
4V7V|1|DA|U|1955
4V7V|1|DA|U|1956
4V7V|1|DA|C|1957

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DK

50S ribosomal protein L14