HL_4V7W_060

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCGAAGACAGCCAGUCGAGUG

Length

22 nucleotides

Bulged bases

4V7W|1|BA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7W_060 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3159

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V7W|1|BA|C|1041
4V7W|1|BA|G|1042
4V7W|1|BA|C|1043
4V7W|1|BA|G|1044
4V7W|1|BA|A|1045
4V7W|1|BA|A|1046
4V7W|1|BA|G|1047
4V7W|1|BA|A|1048
4V7W|1|BA|C|1049
4V7W|1|BA|A|1050
4V7W|1|BA|G|1051
4V7W|1|BA|C|1052
4V7W|1|BA|C|1053
4V7W|1|BA|A|1106
4V7W|1|BA|G|1107
4V7W|1|BA|U|1108
4V7W|1|BA|C|1109
4V7W|1|BA|G|1110
4V7W|1|BA|A|1111
4V7W|1|BA|G|1112
4V7W|1|BA|U|1113
4V7W|1|BA|G|1114

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6

Chain BZ

50S ribosomal protein L25