HL_4V7W_107

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4V7W|1|CA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7W_107 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0825

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V7W|1|CA|G|259
4V7W|1|CA|G|260
4V7W|1|CA|U|261
4V7W|1|CA|A|262
4V7W|1|CA|A|263
4V7W|1|CA|U|264
4V7W|1|CA|G|265
4V7W|1|CA|G|266
4V7W|1|CA|C|267

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CQ

30S ribosomal protein S17

Chain CT

30S ribosomal protein S20