3D structure

PDB id
4V7W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGGGGAAACUCG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7W_204 not in the Motif Atlas
Geometric match to HL_4V9I_038
Geometric discrepancy: 0.3783
The information below is about HL_4V9I_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_68572.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

4V7W|1|AA|C|155
4V7W|1|AA|G|156
4V7W|1|AA|G|157
4V7W|1|AA|G|158
4V7W|1|AA|G|159
4V7W|1|AA|A|160
4V7W|1|AA|A|161
4V7W|1|AA|A|162
4V7W|1|AA|C|163
4V7W|1|AA|U|164
4V7W|1|AA|C|165
4V7W|1|AA|G|166

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AT
30S ribosomal protein S20
Chain BT
50S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3275 s