HL_4V7W_219

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCUUGCG

Length

8 nucleotides

Bulged bases

4V7W|1|DA|C|154|||A, 4V7W|1|DA|U|157, 4V7W|1|DA|U|158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7W_219 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.1059

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

4V7W|1|DA|C|153
4V7W|1|DA|G|154
4V7W|1|DA|C|154|||A
4V7W|1|DA|U|157
4V7W|1|DA|U|158
4V7W|1|DA|G|171
4V7W|1|DA|C|172
4V7W|1|DA|G|173

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28